Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0608
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...   110   2e-25
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     37   0.003
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   3.9  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   5.2  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   5.2  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   5.2  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   6.9  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   9.1  

>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score =  110 bits (264), Expect = 2e-25
 Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 3/130 (2%)
 Frame = +2

Query: 254 FVGAYAHSDNKRQLSVCFGFLTIENGKIT---QKGSIEEFEELLSAGKFSEHIVINLSDS 424
           FVG   H+ +  +L +    + + NGKI    +  + +  EE  S     E  +  L   
Sbjct: 9   FVGKLIHTPSLGELEITDATVGVYNGKIVFLEKSMTPKTLEEAKSHHLLKEATIHKLKPL 68

Query: 425 QLIIPGFIDCHIHAPQFPNIGLGLDRPLLEWLDKYTFPLEKKYSDTVFASKVYDQVVQRL 604
           Q + PG ID HIHAPQ+PN G+G+D PLL+WL+KYTFPLE   +D   A +VY +VV+R 
Sbjct: 69  QFMFPGLIDTHIHAPQYPNSGIGIDVPLLQWLEKYTFPLESSLADLEEARQVYKRVVERT 128

Query: 605 LKNGTTTACY 634
           L NGTT A Y
Sbjct: 129 LSNGTTFASY 138


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +2

Query: 419 DSQLIIPGFIDCHIHAPQFPNIGLGLDRPLLEWLDKYTFPLEKKYS--DTVFASKVYDQV 592
           +  +++PG I  H+H  Q        D PL+ WL    + ++  ++  D   AS++    
Sbjct: 54  EGHIVMPGLISLHVHLAQSLLRSAADDLPLISWLCDTVWKMQGNFTQEDGYVASQL---T 110

Query: 593 VQRLLKNGTTT 625
           +  +LK+GTTT
Sbjct: 111 IAEMLKSGTTT 121


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 390 NLPALRSSSNSSIDPFCVIFPFSIVKNPKHTE 295
           +LP   S+S +S+ PF    PFSI + P H E
Sbjct: 319 SLPISPSTSQNSVQPF----PFSIQQPPLHLE 346


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 296 SVCFGFLTIENGKITQKGSIEEFEELLSAGKFSEHIVINLSDSQLIIPGFIDCHIHAPQF 475
           S C  F+  E  K+         E+LLS    +  I +  +   LI+  F+D H++ P  
Sbjct: 185 SECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYE 244

Query: 476 PNI 484
            N+
Sbjct: 245 INL 247


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 227 NRKMTRKHTFVGAYAHSDNKRQLSVCFGFLTI 322
           N + +R HT    Y   +N R   +C G L +
Sbjct: 688 NERSSRSHTVFMLYIDGENSRTKQICKGTLNL 719


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 445 Y*LSYPCSTIPQHW 486
           Y LSY C  IP HW
Sbjct: 841 YTLSYVCEQIPDHW 854


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 278 DNKRQLSVCFGFLTIENGKITQK 346
           D+ R+ SVCFGF  ++  KI QK
Sbjct: 318 DDSRK-SVCFGFCYVDTLKILQK 339


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 443  FIDCHIHAPQFPNIGLGLDRPLLEWLDKYTFPLEKKYSDTVF 568
            FIDC I   +F    +GL+  + + + K+T P+  + S  ++
Sbjct: 1367 FIDCTICERRFHYDCVGLNNEIADSVSKFTCPICMEQSGGIY 1408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,777
Number of Sequences: 5004
Number of extensions: 51022
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)