Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0608
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0282 - 16749358-16749445,16749640-16749695,16749965-167501... 34 0.11
01_07_0201 + 41956938-41957022,41957123-41957214,41957460-419575... 34 0.11
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582... 31 0.76
11_04_0096 + 13435988-13436803,13436880-13437053,13437673-134378... 28 7.1
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 27 9.4
>12_02_0282 -
16749358-16749445,16749640-16749695,16749965-16750137,
16750768-16750924,16751279-16751422,16751959-16752134,
16753024-16753045,16753845-16753937,16754259-16754431,
16754550-16754760
Length = 430
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 425 QLIIPGFIDCHIHAPQFPNIGLGLDRPLLEWLDKYTFPLEKKYSD 559
++++PGF++ H+H Q G+ D L+ WL +P E ++
Sbjct: 66 RILLPGFVNTHVHTSQQLARGIADDVDLMAWLHGRIWPYESHMTE 110
>01_07_0201 +
41956938-41957022,41957123-41957214,41957460-41957561,
41957691-41957763,41958297-41958403,41958476-41958599,
41959004-41959198,41959515-41959600,41959695-41959802,
41960171-41960266,41960347-41960445,41960562-41960636,
41961040-41961171,41961252-41961367,41961935-41962109
Length = 554
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 275 SDNKRQLSVCFGFLTIENGKITQKGSIEEFEELLSAGKFSEHIVINLSDSQLIIPGFIDC 454
SD R L + + N I F E ++ K + +NLS + +++PGFID
Sbjct: 25 SDLSRDLGEAVADMILANATIYTADPAMPFAEAMAELKGRHTMELNLSGN-VVLPGFIDS 83
Query: 455 HIH 463
H+H
Sbjct: 84 HVH 86
>05_02_0030 +
5826065-5826092,5826307-5828309,5828412-5828732,
5828821-5828907,5828981-5829583,5829680-5829844,
5829941-5830235,5830320-5830534,5830621-5830926,
5831200-5831263,5831384-5831623,5831756-5831853
Length = 1474
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 314 LTIENGKITQKGSIEEFEELLSAGKFSEHIVINLSDSQLII 436
L +ENG+ITQ+G+ + ELL +G E +V DS+ I+
Sbjct: 813 LVMENGEITQEGT---YSELLQSGTAFEQLVNAHKDSKTIL 850
>11_04_0096 +
13435988-13436803,13436880-13437053,13437673-13437834,
13438548-13438690,13439059-13439134,13439231-13439403,
13439482-13439563,13439949-13440026,13440369-13440461,
13441026-13441187,13441225-13441530,13442265-13442369,
13443097-13443243
Length = 838
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Frame = +2
Query: 254 FVGAYAHSDNKRQLSVCFGFLTIENGKITQKGSIEEFEELLSAGKFSEHIVINLSDSQLI 433
FV +Y H + + ++ V +G + +E F++ +A + +I + + +
Sbjct: 512 FVTSYQHPEGQMRIRVTTICRKWVDGSTNTEELVEGFDQETAAVVLARYISLKMEMEVIR 571
Query: 434 IPGFIDCHIHA--------PQFPNIGLGLDRPLLEWLDKYTFPLEKKYSD 559
+ HI+ P+F NI + + WLD+ L ++ D
Sbjct: 572 LSSIAHIHIYVNESRHLCVPRFINIYMNEEFDATRWLDRSLIRLCSRFGD 621
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 386 KFSEHIVINLSDSQLIIPGFIDCHIHAP 469
+F ++I+ D+ L++ FIDCH H P
Sbjct: 4025 QFFDNILATTMDTNLLLRSFIDCH-HDP 4051
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,324,397
Number of Sequences: 37544
Number of extensions: 264262
Number of successful extensions: 524
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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