Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0608
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22)         33   0.25 
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)                   28   5.5  
SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.5  
SB_53419| Best HMM Match : TPR_2 (HMM E-Value=4.2e-06)                 28   5.5  
SB_16652| Best HMM Match : I-set (HMM E-Value=1.2e-37)                 28   5.5  
SB_16035| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22)
          Length = 1043

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +2

Query: 224 ENRKMTRKHTFVGAYAHSDNKRQLSVCFGFLTIENGKITQKGSIEEFEELLSAGKFSEHI 403
           ++R    KH F+G     D KRQ       L  E  ++ +KG +E+ EE L+A K  + I
Sbjct: 66  KDRAAKLKHKFIGLQKQQDIKRQRET----LEREQRELERKGEVEKLEEELTAQKEIQSI 121

Query: 404 V 406
           +
Sbjct: 122 L 122


>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 24/84 (28%), Positives = 36/84 (42%)
 Frame = +2

Query: 338 TQKGSIEEFEELLSAGKFSEHIVINLSDSQLIIPGFIDCHIHAPQFPNIGLGLDRPLLEW 517
           TQ G   +F   LS G+ + H+V+        +PG+   ++H P  P  GL  D   L  
Sbjct: 617 TQPGIPSQF---LSPGQ-APHMVLPPGSPVQQVPGYQPAYLHTPYQPQYGLNKDVATLSH 672

Query: 518 LDKYTFPLEKKYSDTVFASKVYDQ 589
              +T P   + S    A + Y Q
Sbjct: 673 ARSHTPPTPPRTSSPALA-QAYTQ 695


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 413  LSDSQLIIPGFIDCHIHAPQFPNIGLGLDRPLLEWLDKYTFPLEKKYSDTVFASKV 580
            LS   L+  GF+ C  +   F ++   LD+PL++  D +TF +    S  ++ + V
Sbjct: 2784 LSYPSLVYTGFVGCIRNLVDFGDM-YDLDKPLVQLYDVHTFYMGDSSSTDIYITDV 2838


>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
          Length = 1199

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 317 SKTRNIQKVVFCYRNERKH 261
           +K+RNI K VF YRN  KH
Sbjct: 119 AKSRNISKKVFFYRNGDKH 137


>SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +2

Query: 308 GFLTIENGKITQKGSIEEFEELLSAGKFSEHIVINLSDSQLIIPGFIDCHIHAPQ 472
           G++ +++GKI Q   IEE    ++  +      I  ++  +I+PG +D H+H  Q
Sbjct: 19  GYIKVKDGKICQ---IEETIPDVAQIRDENSCKIIDAEELVIMPGVVDSHVHINQ 70


>SB_53419| Best HMM Match : TPR_2 (HMM E-Value=4.2e-06)
          Length = 378

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 338 TQKGSIEEFEELLSAGKFSEHIVINLSDSQLIIPGFIDCHIHAPQFPNIG 487
           T +  I E  ELL     S H V NL DS  +   F+D   H+     +G
Sbjct: 264 TPRQCILEPGELLFVPHGSPHFVENLEDSLAVSANFVDLSNHSAVLEELG 313


>SB_16652| Best HMM Match : I-set (HMM E-Value=1.2e-37)
          Length = 552

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 47  YYSGNITLRCNATSH 3
           Y  GN+TL CNA+SH
Sbjct: 370 YLGGNVTLYCNASSH 384


>SB_16035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 242 RKHTFVGAYAHSDNKRQLSVCFGF 313
           RK TF+ A+ HS+ K  LS  F F
Sbjct: 284 RKSTFIRAFRHSNAKNILSSAFSF 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,706,496
Number of Sequences: 59808
Number of extensions: 336094
Number of successful extensions: 772
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)