Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0608
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13019-11|AAC24449.1|  445|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z82267-6|CAB05189.2|  133|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U13019-11|AAC24449.1|  445|Caenorhabditis elegans Hypothetical
           protein T12A2.1 protein.
          Length = 445

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 326 NGKITQKGSIEEFEELLSA-GKFSEHIVINLSDSQLIIPGFIDCHIH 463
           NGK +  G++   E  L   G   E++ I  S+  + IPGF+D H H
Sbjct: 49  NGKFSYIGNLNGAENKLKGEGVEMENLKIIDSNGGIAIPGFVDGHSH 95


>Z82267-6|CAB05189.2|  133|Caenorhabditis elegans Hypothetical
           protein F38C2.2 protein.
          Length = 133

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +2

Query: 266 YAHSDNKRQLSVCFGFLTIENGKITQKGSIEEFEELLSAGKFSEHIVINLSDS 424
           YAH  + R+LS     L  +N  I Q  +IEE   L+S  K     + NL+ S
Sbjct: 75  YAHGGSVRKLSKIATLLLAKNHIIMQAKAIEELSILVSQLKRKSENLENLNKS 127


>Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical
           protein C06G8.4 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 346 FLCYLSIFNSQKPETYRKLSFVIGMSVSTNKG 251
           FLCYL+IF  Q P+  R  S V+     TN G
Sbjct: 25  FLCYLAIF--QSPKAIRTYSLVLINITLTNVG 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,559,320
Number of Sequences: 27780
Number of extensions: 274653
Number of successful extensions: 602
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)