Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0608
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          26   0.35 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.5  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 408 ITMCSLNLPALRSSSNSSIDPFCVIFPFSIVKN 310
           +TM  LN P  R +  SSI+P C+    +IV N
Sbjct: 215 LTMVKLNWPKKRVTKMSSINP-CIFDNATIVNN 246


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 524 KYTFPLEKKYSDTVFASK 577
           K+ FP E  Y+D  F SK
Sbjct: 129 KFIFPQENNYNDNYFYSK 146


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 235 NDPETYLCWC 264
           ND +T+L WC
Sbjct: 212 NDDKTFLVWC 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,442
Number of Sequences: 438
Number of extensions: 3725
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)