Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0607
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    77   1e-15
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    71   8e-14
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    68   1e-12
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa...    42   7e-05
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    30   0.18 
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    26   3.0  
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    25   6.8  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   6.8  

>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 77.4 bits (182), Expect = 1e-15
 Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
 Frame = +2

Query: 29  SWFSGSQLRVHLDIQVGEHAVDYANVAQKE-KLTELQLRIRQLLDQVHQITKEQAYQRQR 205
           +WFS ++ R+H+D+   +    Y  +A  E +  +L  R+  L  ++  I  EQ  QR R
Sbjct: 112 AWFSSTKTRLHVDLASDDK---YNLIASSEDEAKDLTDRVAALNTRLESILGEQMLQRSR 168

Query: 206 EERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
           E  FR TSES N RV+ W+++Q  VL++   WQ+ HL+ FF  +KLV
Sbjct: 169 EMTFRDTSESANSRVVRWTIVQIVVLLVTCIWQLSHLQRFFVKEKLV 215


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 71.3 bits (167), Expect = 8e-14
 Identities = 36/88 (40%), Positives = 52/88 (59%)
 Frame = +2

Query: 83  HAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWS 262
           H V Y +    +    L  ++RQL D + ++  EQ Y   RE   R T+ESTN RV WWS
Sbjct: 112 HGVIYISDEDLDANNPLLGKVRQLHDTISKVKHEQEYFVARERIHRNTAESTNDRVKWWS 171

Query: 263 LLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
           +LQT +LV +  +Q+ +LK  FE K++V
Sbjct: 172 ILQTVILVSVCVFQIFYLKRLFEVKRVV 199


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 35/97 (36%), Positives = 58/97 (59%)
 Frame = +2

Query: 56  VHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSES 235
           V L+  VG  A DY+++ +   L  ++  IR+  D + +I  +  Y + RE RFR T+ES
Sbjct: 119 VKLEFTVGADADDYSSLQKANNLEPVEADIRRARDFIEEIKGKIYYLQAREARFRNTNES 178

Query: 236 TNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
           TN+RV  ++ L    L ++  WQ+ +L+SFF+ K L+
Sbjct: 179 TNERVKNFAYLTFISLFVLVIWQILYLRSFFQRKHLI 215


>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 41.5 bits (93), Expect = 7e-05
 Identities = 21/75 (28%), Positives = 42/75 (56%)
 Frame = +2

Query: 107 AQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGVLV 286
           A+  K   +Q  + ++   + +I + Q Y + RE R   T +ST  R+ W+SL ++ ++V
Sbjct: 129 AKDYKKDSMQSTVLEISTALSEIDRVQNYFKTREHRNYSTVKSTQARIFWFSLAESIMVV 188

Query: 287 IIGYWQMRHLKSFFE 331
            +   Q+  +K+FF+
Sbjct: 189 ALSALQVFIVKTFFK 203


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 156 WIKYTRSQRSRLTRGKEKSVFDKHQKAQTSECSGGVCYRQ 275
           W+  + S+R  L + ++++V  K ++ Q   CS  VC R+
Sbjct: 266 WLSLSESERRSLVKVEKEAVLQKMKEQQKYSCSCSVCGRK 305


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 229 RKHKPASALVEFATDRCPCHHRLLADETSQEL 324
           RKH+  + +V    DR  C H  L  E +++L
Sbjct: 716 RKHQADACIVRVMKDRKVCEHNQLMAEVTRQL 747


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 83  HAVDYANVAQKEKLTELQLRIRQL--LDQVHQITKEQAYQ 196
           +AVDY   + K+K+ +L+  I +L   D V  +  E  Y+
Sbjct: 147 NAVDYIIQSAKDKVQKLEAEIEELSTADDVDDVLLESKYE 186


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 161 QVHQITKEQAYQRQREERFRQTSESTNQRVLWWSL 265
           ++ +  K++  Q  REER+RQ +E   +  ++  L
Sbjct: 535 EISKRRKQRKAQEMREERYRQRAERDTEEQIYSEL 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,093
Number of Sequences: 5004
Number of extensions: 29454
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)