Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0607
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730... 81 7e-16
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 72 3e-13
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442... 70 1e-12
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 68 4e-12
06_03_1058 + 27254195-27254382,27255041-27255116,27255254-272554... 30 0.98
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 30 0.98
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654... 29 1.7
03_05_1132 - 30609569-30609721,30610113-30610204,30610302-306104... 29 1.7
12_01_0223 + 1708420-1708512,1708790-1709008,1709117-1709330,170... 28 4.0
01_05_0184 + 19005991-19006129,19006523-19006692,19007408-19007659 28 4.0
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 27 6.9
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 27 6.9
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976... 27 6.9
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701... 27 9.1
>02_05_0873 -
32372143-32372287,32372678-32372754,32372863-32373072,
32374645-32374869
Length = 218
Score = 80.6 bits (190), Expect = 7e-16
Identities = 37/102 (36%), Positives = 62/102 (60%)
Frame = +2
Query: 41 GSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFR 220
GS + ++LD ++G A D+ +A+KEK+ ++L +R+L V I + Y + RE R
Sbjct: 117 GSGISINLDWKIGIAAKDWDVIAKKEKIEGVELELRKLEVAVQSIHQNMIYLKAREAEMR 176
Query: 221 QTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
SE TN RV W+S+L V +++ Q+ HL+ +F+ KKL+
Sbjct: 177 TVSEKTNARVAWFSILSLSVCIVVSILQLWHLQGYFQKKKLI 218
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 71.7 bits (168), Expect = 3e-13
Identities = 32/94 (34%), Positives = 58/94 (61%)
Frame = +2
Query: 65 DIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQ 244
D + G A D++NVA+K ++ +++ +++L + + I +E Y R+REE + ++ TN
Sbjct: 137 DWRSGVAAKDWSNVAKKGQVDVMEMELKKLEETIKSIHEEMFYLREREEEMQNLNKQTNS 196
Query: 245 RVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
R+ W L G+ + + Q+ HLK+FFE KKL+
Sbjct: 197 RMAWLGFLSLGICLSVAGLQLWHLKTFFERKKLL 230
>09_04_0359 +
16941904-16942110,16943636-16943785,16944084-16944293,
16944376-16944452,16944554-16944698
Length = 262
Score = 69.7 bits (163), Expect = 1e-12
Identities = 35/99 (35%), Positives = 57/99 (57%)
Frame = +2
Query: 50 LRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTS 229
++++LD +VG D+ +VA+KEKL ++L + +L V I + R +E R TS
Sbjct: 164 VKLNLDWRVGIATKDWDSVAKKEKLEGVELELVKLETSVQAIHENLLLLRSKEANMRDTS 223
Query: 230 ESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
E TN R W S++ V +I+ Q+ HL+ +F KKL+
Sbjct: 224 EKTNARATWLSIISLIVCIIVSVLQLWHLQQYFRKKKLI 262
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 68.1 bits (159), Expect = 4e-12
Identities = 31/94 (32%), Positives = 55/94 (58%)
Frame = +2
Query: 65 DIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQ 244
D + G A D+ NVA+K ++ +++ +++L D ++ I +E Y R REE ++ + TN
Sbjct: 139 DWRSGVSARDWTNVAKKGQVDMMEVELKKLEDTINSIHEEMFYLRAREEEMQELNRRTNS 198
Query: 245 RVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
R+ W + + + Q+ HLK+FFE KKL+
Sbjct: 199 RMAWLGFFSLAICLSVAGLQLWHLKNFFERKKLL 232
>06_03_1058 +
27254195-27254382,27255041-27255116,27255254-27255418,
27255580-27255671,27255713-27255754,27256342-27256387,
27258456-27258683
Length = 278
Score = 30.3 bits (65), Expect = 0.98
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +2
Query: 47 QLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQT 226
QL L Q GE D ++V+ ++L++LQL++ L +VH K++ +Q E+ R
Sbjct: 103 QLEASLRRQTGE---DLSSVSTVDELSQLQLQLESSLSKVH-ARKDELMSQQLEDMRRMV 158
Query: 227 SES 235
S
Sbjct: 159 HYS 161
>03_03_0008 -
13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 30.3 bits (65), Expect = 0.98
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 165 YTRSQRSRLTRGKEKSVFDKHQKAQTSECSGGVCYRQVSLSSSVT 299
YTRS+ S L R + D + + + SGG C V L++ T
Sbjct: 159 YTRSRVSSLRRSRSSLNTDTRKAQDSGKLSGGTCLASVDLAADGT 203
>04_01_0500 -
6540769-6541482,6541819-6541877,6541965-6542064,
6542113-6542322,6542507-6542765,6544022-6544215
Length = 511
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +2
Query: 164 VHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGVL 283
+H+ ++Q Q+Q+++RF + N VLW S++ TGVL
Sbjct: 258 LHEQQQQQQQQQQQQQRFLIAVQ--NVLVLWDSVILTGVL 295
>03_05_1132 -
30609569-30609721,30610113-30610204,30610302-30610428,
30610534-30610705,30610958-30611007,30611093-30611243,
30611353-30611479,30611885-30612071,30612245-30612398,
30612485-30612567,30613439-30613573
Length = 476
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 144 LDSCWIKYTRSQRSRLTRGKEKSVFDKHQKAQTSECSGGVCYRQVSLSSSV 296
+++C TR +++L+ GKE K+ +S C G +CY + +L S +
Sbjct: 153 IEACSEFVTRYHQNQLSSGKEAG---KNLPMLSSACPGWICYAEKTLGSFI 200
>12_01_0223 +
1708420-1708512,1708790-1709008,1709117-1709330,
1709901-1710001
Length = 208
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/62 (20%), Positives = 33/62 (53%)
Frame = +2
Query: 68 IQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQR 247
+ GEH + +N A ++ +E + +QL ++ + ++AY + E ++ E ++R
Sbjct: 66 VLTGEHKGEISNTADLDQSSEAKSDKKQLSEKDEMKSIQEAYAKAYYEAIQKRQEDEDKR 125
Query: 248 VL 253
++
Sbjct: 126 MI 127
>01_05_0184 + 19005991-19006129,19006523-19006692,19007408-19007659
Length = 186
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 243 WFVLSDVCRKRSSLCLW*A-CSFVIWCT 163
WF + ++C K +CL+ A C +W T
Sbjct: 155 WFSVPEICEKHQVICLYCASCMLDVWYT 182
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 124 DRTSTQD*TVAGSSTPDHKGAGLPEAKRRAFSTNIRKHK 240
+ ST+ S+ PD + LPE K+ ++S +++K K
Sbjct: 290 EENSTRSAKHTASADPDQIHSRLPEHKQNSYSASVKKDK 328
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +2
Query: 53 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSE 232
R LD++ E D +KE+ E + +R L D+ + +E+ +R RE + E
Sbjct: 304 RRELDLRDEERRRDLLLEREKERDRERERELRDLRDRERERERERDRERLRERERERELE 363
Query: 233 STNQRV 250
+R+
Sbjct: 364 RERERL 369
>05_03_0387 +
13396158-13396271,13396390-13396434,13397004-13397632,
13397727-13397874,13397971-13398147,13398527-13398595,
13398699-13398788,13399000-13399158,13399663-13399753,
13399917-13400008,13400009-13400233,13400394-13400585
Length = 676
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 160 IQQLSNPELKFGQFFLLCNICIVYSMLTNLNVKMNS 53
I L P + FFLL CIVY M T++++ NS
Sbjct: 432 ISLLREPMMLITGFFLLFMACIVY-MRTDMSISKNS 466
>03_02_0270 -
7011363-7012302,7013237-7013640,7014264-7014333,
7014835-7015331,7015959-7016283,7018060-7018292
Length = 822
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 488 LLKNTDCYKTLF*TVSLLQSITYSTDLQKNKDK 390
+L+N D +K V+ L S+ + +DLQK KD+
Sbjct: 112 VLRNADLHKIQTELVACLPSLPHLSDLQKLKDE 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,858,106
Number of Sequences: 37544
Number of extensions: 177113
Number of successful extensions: 585
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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