Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0607
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)           178   3e-45
SB_53257| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   6e-10
SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   5e-06
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.012
SB_11345| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.082
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)                 29   3.1  
SB_4346| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)                  29   3.1  
SB_29776| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_12754| Best HMM Match : Vicilin_N (HMM E-Value=0.49)                28   4.1  
SB_2434| Best HMM Match : Vicilin_N (HMM E-Value=0.01)                 28   4.1  
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)                 28   5.4  
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         28   5.4  
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   27   7.1  
SB_53962| Best HMM Match : HSL_N (HMM E-Value=0.00048)                 27   7.1  

>SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)
          Length = 348

 Score =  178 bits (433), Expect = 3e-45
 Identities = 84/111 (75%), Positives = 95/111 (85%), Gaps = 2/111 (1%)
 Frame = +2

Query: 20  NSTSW--FSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAY 193
           NST W  ++G +LR+HLDIQVGEHA DYA +A K+KLTELQLRIRQLLDQV QI+KEQ Y
Sbjct: 238 NSTRWSLWAGGRLRIHLDIQVGEHANDYAQIAAKDKLTELQLRIRQLLDQVEQISKEQNY 297

Query: 194 QRQREERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
           QR REERFR TSESTNQRVLWW+L QT +L+  G+WQMRHLK FFEAKKLV
Sbjct: 298 QRFREERFRMTSESTNQRVLWWALAQTVILLATGFWQMRHLKGFFEAKKLV 348


>SB_53257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 34/109 (31%), Positives = 57/109 (52%)
 Frame = +2

Query: 20  NSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQR 199
           N  S  +   L+  +DI          + A  +KL+E+   + QL + +  +  EQ Y  
Sbjct: 54  NKMSTMTPKVLKFSMDIGEAPKDTSKEDNAGHDKLSEM---VSQLSEAMTGVKHEQEYME 110

Query: 200 QREERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
            RE   R  +++TN RV+WWS  ++ VLV +   Q+ +LK FFE +++V
Sbjct: 111 VRERIHRSINDNTNSRVVWWSFFESLVLVAMTLGQVYYLKRFFEVRRVV 159


>SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 24/70 (34%), Positives = 41/70 (58%)
 Frame = +2

Query: 20  NSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQR 199
           + TS   GS   V ++I+ G  A +Y ++A+ EKL  +++ +++L D    I  + AY R
Sbjct: 156 SETSHGGGSDREVSINIKHGVEAKNYEDLAKAEKLKPMEVELKRLEDLGDAIVNDFAYMR 215

Query: 200 QREERFRQTS 229
           QRE+  R T+
Sbjct: 216 QREQEMRDTN 225



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 24/58 (41%), Positives = 35/58 (60%)
 Frame = +2

Query: 56  VHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTS 229
           V ++I+ G  A  Y N+AQ EKL  ++L +R+L D   +I    AY R+REE  R T+
Sbjct: 236 VSINIKHGTEAKAYQNLAQAEKLKPIKLAMRRLEDMADEIVSSFAYFREREEEQRNTN 293



 Score = 33.5 bits (73), Expect = 0.11
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
 Frame = +2

Query: 83  HAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFR---QTSESTNQRVL 253
           H + Y    +   + ++ + ++ L  + +    + A+   R+  F       EST  R+L
Sbjct: 296 HTIQYCTNIRNHVI-DIDVTLQLLFTKENATKGKFAFTFDRDGHFDLCFDNQESTGARIL 354

Query: 254 WWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
           +  +  T +LV++   Q+ +L  FF AKKL+
Sbjct: 355 YLGVFLTMLLVMLTGGQLVYLHRFFAAKKLI 385


>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1283

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = +2

Query: 56  VHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSES 235
           V +DIQ  EH      + + ++L E QLR+ +L  Q HQ+ KE   ++Q +ER +   + 
Sbjct: 215 VVVDIQKNEHQ---QRLLELQRLQEEQLRLTELEIQEHQLKKELILKKQEQERQKLLQQL 271

Query: 236 TNQ 244
            N+
Sbjct: 272 RNE 274


>SB_11345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = +2

Query: 143 IRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKS 322
           +R  LD+   I    +    R+ R  ++ +S   RV WWSL+Q+  L+ +   Q+  +K 
Sbjct: 178 VRVDLDKAEHIQNFISSAAARDFRLAKSKDS---RVFWWSLIQSVALIGVAIVQVNVVKH 234

Query: 323 FFEAKK 340
           FF   K
Sbjct: 235 FFGGGK 240


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
 Frame = +2

Query: 56   VHLDIQVGEHAVDYANV---AQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQT 226
            +  D++    A++ AN    A +EKL++++ +I++L + + ++T         + + +Q 
Sbjct: 3484 IFCDVEPKRKALEAANAELAAAEEKLSKIKAKIQELDENLAELTANFERATSEKLKCQQE 3543

Query: 227  SESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKK 340
            +EST + +   + L  G+      W    +KSF E +K
Sbjct: 3544 AESTAKTIELANRLVGGLASENVRWG-ESVKSFKEQEK 3580


>SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)
          Length = 197

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/45 (26%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
 Frame = +2

Query: 101 NVAQKEKLTELQL---RIRQLLDQVHQITKEQAYQRQREERFRQT 226
           ++ +KE L ++Q+   +++++  Q  ++ K++  +R+ EERF +T
Sbjct: 9   SLREKELLEKIQMEQEKLQRIKQQQLELEKQERLEREEEERFNKT 53


>SB_4346| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
          Length = 189

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 89  VDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQRE-ERFRQTSESTNQR 247
           V+  ++  +  + +LQ R+R + +Q  QITKE  Y+  +E  R  +T ++  QR
Sbjct: 67  VEQHDLTDRSTVEQLQSRLRSVEEQNRQITKE--YEENKELLRLAETEKNILQR 118


>SB_29776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 80  EHAVDYANVAQKEK-LTELQLRIRQLLDQVHQITKEQA-YQRQREERFRQTSESTNQR 247
           E   +   + ++E+ LTE Q   +++ D+   +T+EQA  +R RE     T E  N +
Sbjct: 181 EEQANAKRIRERERPLTEEQANAKRIRDKERTLTEEQANAKRIRERGHTSTEEQANAK 238



 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 80  EHAVDYANVAQKEK-LTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ-TSESTNQR 247
           E   +   +  KE+ LTE Q   +++ ++   +T+EQA  ++  ER R  T E  N +
Sbjct: 45  EEQANAKRIRDKERPLTEEQANAKRIRERERTLTEEQANAKRIRERERPLTEEQANAK 102



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 80  EHAVDYANVAQKEK-LTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ-TSESTNQR 247
           E   +   + ++E+ LTE Q   +++ ++   +T+EQA  ++  ER R  T E  N +
Sbjct: 62  EEQANAKRIRERERTLTEEQANAKRIRERERPLTEEQANAKRIRERERTLTEEQANAK 119



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 80  EHAVDYANVAQKEK-LTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ-TSESTNQR 247
           E   +   + ++E+ LTE Q   +++ ++   +T+EQA  ++  ER R  T E  N +
Sbjct: 79  EEQANAKRIRERERPLTEEQANAKRIRERERTLTEEQANAKRIRERERPLTEEQANAK 136



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +2

Query: 80  EHAVDYANVAQKEK-LTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ-TSESTNQR 247
           E   +   + ++E+ LTE Q   +++ ++   +T+EQA  ++  ER R+ T E  N +
Sbjct: 96  EEQANAKRIRERERTLTEEQANAKRIRERERPLTEEQANAKRIRERERKLTIEQANAK 153


>SB_12754| Best HMM Match : Vicilin_N (HMM E-Value=0.49)
          Length = 440

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 107 AQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSEST 238
           A KEK  ++ L  RQ LDQ+H    +   +RQR E+  ++  ST
Sbjct: 261 AMKEKDVKM-LGYRQALDQLHGQLLDAREERQRAEQILESRYST 303


>SB_2434| Best HMM Match : Vicilin_N (HMM E-Value=0.01)
          Length = 317

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +2

Query: 80  EHAVDYANVAQKEKLTELQLRIRQLLDQVH--QITKEQAYQRQREERFRQTSESTNQRVL 253
           +H  +  N+   E L   + + +Q   + +  Q  +E+A +++REE  +   E  N+R  
Sbjct: 55  QHETEINNIGLNEFLEHEKKKWKQTEQEKNSFQTQREEALRKRREEEEKILIEQHNKRTE 114

Query: 254 WWSLLQ 271
           W + +Q
Sbjct: 115 WQTKMQ 120


>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
          Length = 1178

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 116 EKLTELQLRIRQLLDQVHQITKE-QAYQRQREERFRQTSESTNQ 244
           ++ T   L IR+L  +VHQ+T+E +A Q  R +  ++  E T++
Sbjct: 307 QQTTATGLVIRELEGRVHQLTQESEALQESRTKLAKEKEELTDK 350


>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 53  RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQ-AYQRQREER 214
           R H   + G+   + AN   K ++TEL L+++    +   + +E  +YQR+  E+
Sbjct: 313 RAHHVTRRGKDEAEKANFKLKTEVTELNLKLKSYQQENEDLNQEVISYQRKVSEK 367


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +2

Query: 110 QKEKLTELQLRIRQLLDQVHQITKEQAYQRQR--EERFRQTSESTNQR 247
           ++ +  EL L+ RQ  ++  +  +EQ  QRQR  EER RQ  E+  QR
Sbjct: 603 ERRRQQELLLQ-RQREEEEMRRQQEQMLQRQREEEERRRQQEEAERQR 649


>SB_53962| Best HMM Match : HSL_N (HMM E-Value=0.00048)
          Length = 250

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
 Frame = +2

Query: 50  LRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTS 229
           L +HL   V ++A  ++  A K          +Q+LD +  + +   Y  QR   F  + 
Sbjct: 27  LLLHLKRIVADNAEYFSKYAHKAVYKRFHESFKQILDSIGSMEELSTYLAQRVTLFDFSP 86

Query: 230 E-STNQRVLWWSLLQTGVLVI--IGYWQMRHLKSFF 328
           E   N       + + G+ V+  I Y+ + H + F+
Sbjct: 87  EIKGNGYRSLLRITEHGIRVVTEISYYCLTHREKFY 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,137,099
Number of Sequences: 59808
Number of extensions: 222208
Number of successful extensions: 789
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)