Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0607
         (522 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    27   0.38 
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   4.7  
U51225-1|AAA96405.1|  692|Anopheles gambiae hexamerin protein.         23   6.2  
AF020872-1|AAC31875.1|  692|Anopheles gambiae hexamerin A protein.     23   6.2  
AF020871-1|AAC31874.1|  692|Anopheles gambiae hexamerin A protein.     23   6.2  
AF020870-1|AAC31873.1|  692|Anopheles gambiae hexamerin A protein.     23   6.2  

>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 0.38
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 110 QKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQR 247
           Q E+    QLR ++   Q  Q  ++Q  QRQ+++R +Q  +   Q+
Sbjct: 293 QGERYVPPQLRQQRQQQQHQQQQQQQQQQRQQQQRQQQRQQQQRQQ 338



 Score = 26.2 bits (55), Expect = 0.67
 Identities = 13/54 (24%), Positives = 31/54 (57%)
 Frame = +2

Query: 110 QKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQ 271
           Q+++  + Q + +Q   Q  Q  ++Q  Q+QR+++ +Q      Q+ LW ++++
Sbjct: 187 QQQQQQQQQQQQQQQQQQQQQRQQQQQCQQQRQQQPQQQQLQQPQQQLWTTVVR 240


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 12/65 (18%), Positives = 32/65 (49%)
 Frame = +2

Query: 41  GSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFR 220
           G+  R   D+Q  + A++       E++T +Q   RQ+   + +  ++   Q ++ ++  
Sbjct: 385 GTVRRTLQDVQAKQAAIERGMRNASERVTRIQKDARQIEQDLQERNRDGLSQVEQRKQAV 444

Query: 221 QTSES 235
           +T ++
Sbjct: 445 ETEKA 449


>U51225-1|AAA96405.1|  692|Anopheles gambiae hexamerin protein.
          Length = 692

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 18/78 (23%), Positives = 36/78 (46%)
 Frame = +2

Query: 89  VDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLL 268
           +DY+ +   +K   ++ R  +L   +HQ+   + Y  +R   +  T +     ++W   L
Sbjct: 240 MDYSFLLGGDKFGLIKDRRGELYWYMHQMLLAR-YNLERMSNYMGTVKP----LVWRFPL 294

Query: 269 QTGVLVIIGYWQMRHLKS 322
           +TG   ++ YW     KS
Sbjct: 295 KTGYFSLLSYWNGVPFKS 312


>AF020872-1|AAC31875.1|  692|Anopheles gambiae hexamerin A protein.
          Length = 692

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 18/78 (23%), Positives = 36/78 (46%)
 Frame = +2

Query: 89  VDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLL 268
           +DY+ +   +K   ++ R  +L   +HQ+   + Y  +R   +  T +     ++W   L
Sbjct: 240 MDYSFLLGGDKFGLIKDRRGELYWYMHQMLLAR-YNLERMSNYMGTVKP----LVWRFPL 294

Query: 269 QTGVLVIIGYWQMRHLKS 322
           +TG   ++ YW     KS
Sbjct: 295 KTGYFSLLSYWNGVPFKS 312


>AF020871-1|AAC31874.1|  692|Anopheles gambiae hexamerin A protein.
          Length = 692

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 18/78 (23%), Positives = 36/78 (46%)
 Frame = +2

Query: 89  VDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLL 268
           +DY+ +   +K   ++ R  +L   +HQ+   + Y  +R   +  T +     ++W   L
Sbjct: 240 MDYSFLLGGDKFGLIKDRRGELYWYMHQMLLAR-YNLERMSNYMGTVKP----LVWRFPL 294

Query: 269 QTGVLVIIGYWQMRHLKS 322
           +TG   ++ YW     KS
Sbjct: 295 KTGYFSLLSYWNGVPFKS 312


>AF020870-1|AAC31873.1|  692|Anopheles gambiae hexamerin A protein.
          Length = 692

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 18/78 (23%), Positives = 36/78 (46%)
 Frame = +2

Query: 89  VDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLL 268
           +DY+ +   +K   ++ R  +L   +HQ+   + Y  +R   +  T +     ++W   L
Sbjct: 240 MDYSFLLGGDKFGLIKDRRGELYWYMHQMLLAR-YNLERMSNYMGTVKP----LVWRFPL 294

Query: 269 QTGVLVIIGYWQMRHLKS 322
           +TG   ++ YW     KS
Sbjct: 295 KTGYFSLLSYWNGVPFKS 312


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 448,939
Number of Sequences: 2352
Number of extensions: 7629
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)