Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0607
(522 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical ... 180 4e-46
Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical pr... 85 2e-17
AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical ... 59 2e-09
AF039713-7|AAB96722.1| 203|Caenorhabditis elegans Hypothetical ... 58 3e-09
AF014940-5|AAB63937.1| 203|Caenorhabditis elegans Suppressor/en... 51 4e-07
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 33 0.12
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 33 0.12
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 33 0.12
M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein. 33 0.12
AL132904-19|CAD91707.1| 371|Caenorhabditis elegans Hypothetical... 29 2.7
Z66499-5|CAE17941.1| 143|Caenorhabditis elegans Hypothetical pr... 27 8.1
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 27 8.1
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 27 8.1
>AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical
protein Y60A3A.9 protein.
Length = 211
Score = 180 bits (439), Expect = 4e-46
Identities = 84/109 (77%), Positives = 93/109 (85%)
Frame = +2
Query: 20 NSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQR 199
NST+WF+G+QLRVHLDIQ G+HA DYA +AQK+KL ELQLRIRQLLDQV QITKEQ YQR
Sbjct: 103 NSTAWFNGAQLRVHLDIQAGDHAQDYAQIAQKDKLNELQLRIRQLLDQVDQITKEQNYQR 162
Query: 200 QREERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
REERFRQTSESTN RV +WS+ Q VL I G WQMRHL+ FFEAKKLV
Sbjct: 163 YREERFRQTSESTNSRVFYWSIAQVVVLAITGAWQMRHLRGFFEAKKLV 211
>Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical
protein F47G9.1 protein.
Length = 204
Score = 85.4 bits (202), Expect = 2e-17
Identities = 41/102 (40%), Positives = 66/102 (64%)
Frame = +2
Query: 41 GSQLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFR 220
G + V L ++ G A +Y ++A+ EKL L++ +R+L D ITK+ A+ RQREE R
Sbjct: 102 GEKREVSLILKHGVEAKNYDDIAKAEKLKPLEVELRRLEDMADSITKDFAFMRQREEEMR 161
Query: 221 QTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
T+ESTN RVL+ S+ L+ + WQ+ L+++F++KKL+
Sbjct: 162 NTNESTNSRVLYLSIFSMLCLLGLAIWQVLFLRNYFKSKKLI 203
>AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical
protein T08D2.1 protein.
Length = 167
Score = 59.3 bits (137), Expect = 2e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +2
Query: 20 NSTSWFSGSQLRVHLDIQVGEHAVDYANVAQKEKLTE 130
N+T+WF+G+QLRVHLDIQ G+HA DYA V ++ KL E
Sbjct: 103 NTTAWFNGAQLRVHLDIQAGDHAQDYAQVEEERKLDE 139
>AF039713-7|AAB96722.1| 203|Caenorhabditis elegans Hypothetical
protein F57B10.5 protein.
Length = 203
Score = 58.4 bits (135), Expect = 3e-09
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +2
Query: 56 VHLDIQVGEHAVDYANVAQ-KEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSE 232
V++D Q G+ +A V Q +T+L+ + D++ I Q + R RE R+ +E
Sbjct: 105 VYMDWQFGDQNALHAAVTQGAHAMTQLENYAVAIGDKLRTIDDYQTHHRLREATGRKRAE 164
Query: 233 STNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKK 340
N+RV+ WSL Q+ V+V IG Q+ LKSFF K+
Sbjct: 165 ELNERVMIWSLGQSAVVVFIGIGQVFLLKSFFNDKR 200
>AF014940-5|AAB63937.1| 203|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein9 protein.
Length = 203
Score = 51.2 bits (117), Expect = 4e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Frame = +2
Query: 101 NVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGV 280
+ A KL E+ +R+L + + EQ Y RE R +E+TN RV+ W+ + V
Sbjct: 125 DAADNAKLEEM---VRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEAFV 181
Query: 281 LVIIGYWQMRHLKSFFEAKKLV 346
LV + Q+ +LK FFE + +V
Sbjct: 182 LVGMTVGQIFYLKRFFEVRTMV 203
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 53 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 223
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 1633 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 1685
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 53 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 223
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 1633 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 1685
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 53 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 223
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 1633 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 1685
>M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein.
Length = 273
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 53 RVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 223
++ DI E A+D+AN A ++ Q IR+ LDQ+ ++ + +++R E FR+
Sbjct: 133 KLEADINELEIALDHANKANEDA----QKNIRRYLDQIRELQQTVDEEQKRREEFRE 185
>AL132904-19|CAD91707.1| 371|Caenorhabditis elegans Hypothetical
protein Y111B2A.26 protein.
Length = 371
Score = 28.7 bits (61), Expect = 2.7
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +2
Query: 47 QLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITK-----EQAYQRQREE 211
+LR HL I V E + A V +++ TEL+ R+R+L + HQ+ + Q YQ Q
Sbjct: 42 RLREHLMI-VEETSTREA-VEAEQRETELRARVRELETKGHQVEEGASESTQQYQVQIAS 99
Query: 212 RFRQTSESTNQRVLWWSLLQTGV 280
Q N+ W +T V
Sbjct: 100 LTSQVESLQNKTTEWKKKFETEV 122
>Z66499-5|CAE17941.1| 143|Caenorhabditis elegans Hypothetical
protein T01B7.9 protein.
Length = 143
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 225 HQKAQTSECSGGVCYRQVSLSSSV 296
HQ Q +CS GVCY + + S V
Sbjct: 48 HQCNQPRDCSTGVCYGDICVKSLV 71
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 161 QVHQITKEQAYQRQREERFRQTSESTNQRVLWW---SLLQTGVLVIIGYWQMRHLK 319
Q+H+I Q+Y + +++ + E + + W S + II YWQ R K
Sbjct: 490 QIHRIINHQSYAKSQQDYLVKWKELSYDQATWERDDSNIANYEEAIIKYWQHRESK 545
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 161 QVHQITKEQAYQRQREERFRQTSESTNQRVLWW---SLLQTGVLVIIGYWQMRHLK 319
Q+H+I Q+Y + +++ + E + + W S + II YWQ R K
Sbjct: 490 QIHRIINHQSYAKSQQDYLVKWKELSYDQATWERDDSNIANYEEAIIKYWQHRESK 545
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,009,422
Number of Sequences: 27780
Number of extensions: 173332
Number of successful extensions: 649
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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