Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0607
(522 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09580.1 68414.m01075 emp24/gp25L/p24 family protein similar ... 81 4e-16
At1g57620.1 68414.m06539 emp24/gp25L/p24 family protein similar ... 77 1e-14
At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar ... 74 5e-14
At1g69460.1 68414.m07981 emp24/gp25L/p24 family protein similar ... 74 7e-14
At1g21900.1 68414.m02741 emp24/gp25L/p24 family protein similar ... 74 7e-14
At1g14010.1 68414.m01654 emp24/gp25L/p24 family protein similar ... 71 5e-13
At1g26690.1 68414.m03251 emp24/gp25L/p24 family protein similar ... 68 3e-12
At3g29070.1 68416.m03636 emp24/gp25L/p24 family protein similar ... 65 2e-11
At2g03040.1 68415.m00257 transmembrane protein-related low simil... 39 0.002
At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ bo... 29 1.4
At1g11720.1 68414.m01345 starch synthase, putative strong simila... 29 2.5
>At1g09580.1 68414.m01075 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 217
Score = 81.0 bits (191), Expect = 4e-16
Identities = 38/97 (39%), Positives = 61/97 (62%)
Frame = +2
Query: 56 VHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSES 235
+++D + G A D+A++A+KEK+ ++L IR+L V I + Y R RE R SE
Sbjct: 121 INIDWRTGIAAKDWASIAKKEKIEGVELEIRKLEGAVEAIHENILYLRNREADMRTMSEK 180
Query: 236 TNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
TN RV W+S++ GV + + +Q+ +LK +FE KKL+
Sbjct: 181 TNSRVAWYSIMSLGVCIAVSGFQVLYLKQYFEKKKLI 217
>At1g57620.1 68414.m06539 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 212
Score = 76.6 bits (180), Expect = 1e-14
Identities = 34/97 (35%), Positives = 59/97 (60%)
Frame = +2
Query: 56 VHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSES 235
+++D + G A D+ ++A+KEK+ ++L ++L V I + Y R RE R SE
Sbjct: 116 INIDWKTGIAAKDWDSIARKEKIEGVELEFKKLEGAVEAIHENLIYLRNREAEMRIVSEK 175
Query: 236 TNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
TN RV W+S++ G+ +++ Q+ +LK +FE KKL+
Sbjct: 176 TNSRVAWYSIMSLGICIVVSGLQILYLKQYFEKKKLI 212
>At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 170
Score = 74.1 bits (174), Expect = 5e-14
Identities = 34/99 (34%), Positives = 59/99 (59%)
Frame = +2
Query: 50 LRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTS 229
L + D + G H+ ++ NVA+K ++ ++ +++ L+D V I +E Y R+REE ++ +
Sbjct: 72 LTIDFDWKTGVHSKEWTNVAKKSQVDMMEYQVKTLMDTVISIHEEMYYLREREEEMQELN 131
Query: 230 ESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
STN ++ W S V + + Q HLK+FFE KKL+
Sbjct: 132 RSTNSKMAWLSFGSLVVCLSVAGLQFWHLKTFFEKKKLI 170
>At1g69460.1 68414.m07981 emp24/gp25L/p24 family protein similar to
SP|Q28735 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Oryctolagus
cuniculus}; contains Pfam profile: PF01105:
emp24/gp25L/p24 family
Length = 214
Score = 73.7 bits (173), Expect = 7e-14
Identities = 34/99 (34%), Positives = 58/99 (58%)
Frame = +2
Query: 50 LRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTS 229
L + + + G + +ANVA+K ++ ++ ++ LLD V+ I +E Y R REE + +
Sbjct: 116 LSIDFEWKTGVQSKSWANVAKKSQVEVMEFEVKSLLDTVNSIHEEMYYLRDREEEMQDLN 175
Query: 230 ESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
STN ++ W S+L V + + Q HLK+FFE KK++
Sbjct: 176 RSTNTKMAWLSVLSFFVCIGVAGMQFLHLKTFFEKKKVI 214
>At1g21900.1 68414.m02741 emp24/gp25L/p24 family protein similar to
SP|O35587 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Mesocricetus
auratus}; contains Pfam profile PF01105: emp24/gp25L/p24
family
Length = 216
Score = 73.7 bits (173), Expect = 7e-14
Identities = 36/95 (37%), Positives = 61/95 (64%)
Frame = +2
Query: 62 LDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTSESTN 241
+D ++G A D+ +VA+KEK+ ++L++R+L V I + Y + RE R+ SE+TN
Sbjct: 122 VDWKMGIAAKDWDSVAKKEKIEGVELQLRRLEGLVLSIRENLNYIKDREAEMREVSETTN 181
Query: 242 QRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
RV W+S++ GV V++ Q+ +LK +F KKL+
Sbjct: 182 SRVAWFSIMSLGVCVVVVGSQILYLKRYFHKKKLI 216
>At1g14010.1 68414.m01654 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 212
Score = 70.9 bits (166), Expect = 5e-13
Identities = 32/99 (32%), Positives = 56/99 (56%)
Frame = +2
Query: 50 LRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTS 229
L + D + G H D++NVA+K ++ ++ +++L + V+ I E Y R REE +
Sbjct: 114 LIIDFDWRTGIHTKDWSNVAKKSQVETMEFEVKKLFETVNGIHDEMFYLRDREEEMHNLN 173
Query: 230 ESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
+TN ++ W S + V + + Q HLK+FF+ KKL+
Sbjct: 174 IATNSKMAWLSFVSLAVCLSVAGLQFWHLKTFFQKKKLI 212
>At1g26690.1 68414.m03251 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 214
Score = 68.1 bits (159), Expect = 3e-12
Identities = 30/99 (30%), Positives = 59/99 (59%)
Frame = +2
Query: 50 LRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQTS 229
L + D + G + +++VA+K ++ ++ +++L++ V+ I +E Y R+REE + +
Sbjct: 116 LSIDFDWRTGVQSKSWSSVAKKSQVEVMEFDVKRLIETVNSIHEEMFYLREREEEMQNLN 175
Query: 230 ESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
+TN ++ W S L V + + Q HLK+FFE KK++
Sbjct: 176 RATNSKMAWLSFLSLFVCLGVAGMQFVHLKTFFEKKKVI 214
>At3g29070.1 68416.m03636 emp24/gp25L/p24 family protein similar to
SP|Q28735 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Oryctolagus
cuniculus}; contains Pfam profile: PF01105
emp24/gp25L/p24 family
Length = 204
Score = 65.3 bits (152), Expect = 2e-11
Identities = 34/101 (33%), Positives = 58/101 (57%)
Frame = +2
Query: 44 SQLRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQREERFRQ 223
++ V + + G A D+ +A++ ++T L++ +R+LLD I +E +RE ++
Sbjct: 104 AKFAVDFEWKSGVEAKDWTTIAKRGQITMLEVEVRKLLDVTETIHEEMFQLIEREREMQE 163
Query: 224 TSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 346
+ STN R+ SLL V + + Q+RHLKSF E KKL+
Sbjct: 164 LNRSTNSRMAALSLLSFVVTMSVAGLQLRHLKSFLERKKLL 204
>At2g03040.1 68415.m00257 transmembrane protein-related low
similarity to SP|Q28735|TM21_RABIT Transmembrane protein
Tmp21 precursor (21 kDa Transmembrane trafficking
protein) (Integral membrane protein p23) {Oryctolagus
cuniculus}
Length = 166
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/52 (30%), Positives = 32/52 (61%)
Frame = +2
Query: 50 LRVHLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQR 205
L + D + G H+ ++ NVA+K ++ ++ +++ L+D V I +E Y R+R
Sbjct: 115 LTIDFDWKTGVHSKEWTNVAKKSQVDMMEYQVKTLMDTVISIHEEMYYLRER 166
>At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ
boundaries domain protein 1 (LBD1) identical to
SP|Q9LQR0 LOB domain protein 1 {Arabidopsis thaliana}
Length = 190
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +2
Query: 59 HLDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQR------EERFR 220
HL QV E A AQ E + +Q + LL+ ++ + ++Q ++ + F
Sbjct: 114 HLQRQVSELQAQLAK-AQVE-MVNMQFQRSNLLELIYNMDQQQKQEQDNMSFESNDLGFL 171
Query: 221 QTSESTNQRVLWWSLLQT 274
+ +TN +LWW L T
Sbjct: 172 EDKSNTNSSMLWWDPLWT 189
>At1g11720.1 68414.m01345 starch synthase, putative strong
similarity to soluble-starch-synthase [Solanum
tuberosum] GI:1911166
Length = 1025
Score = 28.7 bits (61), Expect = 2.5
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Frame = +2
Query: 62 LDIQVGEHAVDYANVAQKEKLTELQLRIRQLLDQVHQITKEQAYQRQR----EERFRQTS 229
++I+ G VD+ N +EKL E + ++ ++ Q +++ + Q+ +R + +
Sbjct: 218 VEIKGGMDKVDFENFLLEEKLREQEKLAKEEAERERQKEEKRRIEAQKAAIEADRAQAKA 277
Query: 230 ESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV*MNYN 361
E+ +R L ++ V+ W + S F+A+ V + YN
Sbjct: 278 ETQKRRELLQPAIKKAVVSAENVWYIE--PSDFKAEDTVKLYYN 319
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,114,137
Number of Sequences: 28952
Number of extensions: 149963
Number of successful extensions: 479
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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