Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0604
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0807 + 32125987-32126029,32126030-32126208,32126760-321269... 132 3e-31
03_05_0253 + 22416981-22416993,22417458-22417639,22417965-224181... 123 1e-28
07_03_1177 - 24574682-24574852,24575047-24575618,24575711-245760... 122 3e-28
02_01_0652 - 4848174-4848194,4849121-4849693,4849816-4849955,485... 57 1e-08
08_02_1169 + 24858843-24858993,24859495-24859788,24860303-248603... 56 2e-08
04_04_0204 + 23582239-23582338,23582866-23583213,23583357-235834... 52 5e-07
09_02_0535 - 10346395-10346705,10347100-10347175,10348931-103490... 50 1e-06
12_02_0229 - 15940144-15940451,15940879-15941380,15941594-159417... 50 2e-06
02_04_0415 + 22706964-22707072,22707784-22708077,22708304-227084... 49 3e-06
02_03_0403 + 18636953-18637004,18637088-18637299,18638852-186389... 33 0.20
03_05_0730 + 27208293-27208813,27209052-27209173,27210429-272104... 32 0.34
07_01_1213 + 11562671-11562729,11563814-11563907,11564465-115645... 29 4.2
07_03_1547 + 27623945-27625612 28 5.6
12_02_0335 - 17669232-17670063,17670619-17672150 27 9.7
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 27 9.7
01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357... 27 9.7
01_06_0843 - 32374830-32374958,32375407-32375482,32375572-323756... 27 9.7
>01_06_0807 +
32125987-32126029,32126030-32126208,32126760-32126943,
32127714-32127788,32128079-32128188,32128747-32128965,
32129124-32129279,32129759-32129911,32130223-32130349,
32131598-32131728,32131858-32132139
Length = 552
Score = 132 bits (318), Expect = 3e-31
Identities = 70/142 (49%), Positives = 92/142 (64%)
Frame = +3
Query: 222 PLIIAHRGASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDNELSLTTDVAS 401
P IAHRG++G +PE T +Y +I GAD+IE D++ +KDG L+ HD L TTDVAS
Sbjct: 53 PYNIAHRGSNGEIPEETAAAYLRAIEEGADFIETDILASKDGALICFHDVTLDATTDVAS 112
Query: 402 RIEFATRNRTQTVDGSAITGWFTEDFTLAEIKTLRARERIPDIRAGNARMDGTFTIPTFQ 581
R EF+ R RT V+ TGWF DFTL E+KTL+ +R P + + +G F+I TF+
Sbjct: 113 RKEFSNRRRTYEVEWFNATGWFVVDFTLEELKTLKVNQRYP---FRDQQYNGKFSIITFE 169
Query: 582 EIISLAKGLQKSHKRTIGIYPE 647
E IS+A L S RT+GIYPE
Sbjct: 170 EFISIA--LDAS--RTVGIYPE 187
>03_05_0253 +
22416981-22416993,22417458-22417639,22417965-22418148,
22418241-22418315,22418481-22418590,22419411-22419629,
22419713-22419868,22419996-22420232
Length = 391
Score = 123 bits (296), Expect = 1e-28
Identities = 65/142 (45%), Positives = 89/142 (62%)
Frame = +3
Query: 222 PLIIAHRGASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDNELSLTTDVAS 401
P IAHRG++G +PE T +Y +I GAD+IE D++ TKDG L+ HD L TTD+A+
Sbjct: 44 PYNIAHRGSNGEIPEETTAAYLRAIEEGADFIESDILATKDGHLICFHDVILDATTDIAN 103
Query: 402 RIEFATRNRTQTVDGSAITGWFTEDFTLAEIKTLRARERIPDIRAGNARMDGTFTIPTFQ 581
R EFA R RT V+ +TGWF DFTL E+K+LR ++R + R + + +G + I TF
Sbjct: 104 RTEFANRKRTYEVERQNVTGWFVVDFTLEELKSLRVKQRY-NFR--DQQYNGKYQIITFD 160
Query: 582 EIISLAKGLQKSHKRTIGIYPE 647
E I +A R +GIYPE
Sbjct: 161 EYILIALYAD----RVVGIYPE 178
>07_03_1177 -
24574682-24574852,24575047-24575618,24575711-24576068,
24576108-24576152
Length = 381
Score = 122 bits (293), Expect = 3e-28
Identities = 67/142 (47%), Positives = 86/142 (60%)
Frame = +3
Query: 222 PLIIAHRGASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDNELSLTTDVAS 401
P IAHRG++G +PE T +Y +I GAD+IE D+ TKDG LV HD L TTDVA
Sbjct: 52 PFNIAHRGSNGELPEETAAAYMRAIDEGADFIEADVTATKDGHLVCFHDTTLDATTDVAD 111
Query: 402 RIEFATRNRTQTVDGSAITGWFTEDFTLAEIKTLRARERIPDIRAGNARMDGTFTIPTFQ 581
EFA+R RT V + +TG+F DFTLAE+KTLR+++R R + + I TF
Sbjct: 112 HPEFASRRRTLEVQWTNVTGFFITDFTLAELKTLRSKQRYA-FRDRSYNGGESSRIITFD 170
Query: 582 EIISLAKGLQKSHKRTIGIYPE 647
E I A G + R +GIYPE
Sbjct: 171 EFIDTAAG---AASRVVGIYPE 189
>02_01_0652 -
4848174-4848194,4849121-4849693,4849816-4849955,
4850072-4850359,4850458-4850505,4850605-4851106,
4851217-4851326,4851620-4851916,4852025-4852124
Length = 692
Score = 56.8 bits (131), Expect = 1e-08
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Frame = +3
Query: 222 PLIIAHRGASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDNELSLTTDVAS 401
PLII H GASG P T +Y ++ GAD I+ + M+KDGV + +LS +T ++
Sbjct: 357 PLIITHNGASGVYPGSTDLAYQQAVKDGADIIDCAVRMSKDGVAFCQPSADLSTSTTAST 416
Query: 402 RIEFATRNRTQTVDGSAITGWFTEDFTLAEIKTLRARERIPDIRAG---NARMDGTFTIP 572
F T+ T + + +G F+ D T +EI+TL+ P +AG N
Sbjct: 417 --SFMTKISTVS-EIQNKSGIFSFDLTWSEIQTLKPDLLGPYTQAGLKRNPAAKNAGKFV 473
Query: 573 TFQEIISLAKGLQKS 617
T E + LAK S
Sbjct: 474 TLPEFLDLAKATNVS 488
Score = 52.4 bits (120), Expect = 3e-07
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Frame = +3
Query: 222 PLIIAHRGASGYVPEHTLGSY--ALSITMGADYIEPDLVMTKDGVLVARHDNELSLTTDV 395
PL+IA G SG P+ + SY A+S ++ + DL ++ DG+ + L +T +
Sbjct: 37 PLVIARGGFSGLFPDSSQFSYQFAMSSSLHDVVLYCDLQLSSDGLGFCKTGLTLENSTLI 96
Query: 396 ASRIEFATRNRTQTVDGSAITGWFTEDFTLAEIKTLRARERIPDIRAGNARMDGTFTIPT 575
A F R +T V+G I GWF DFT E+ + I DI + + DG + T
Sbjct: 97 AEA--FPKRAKTYKVNGEEIHGWFALDFTADEL--YQNVTLIQDIFSRPSTFDGAMGMFT 152
Query: 576 FQEIISL 596
++++ L
Sbjct: 153 LEDLVGL 159
>08_02_1169 +
24858843-24858993,24859495-24859788,24860303-24860349,
24860779-24861277,24862233-24862274,24862376-24862666,
24862793-24862932,24863278-24863770,24864105-24864484
Length = 778
Score = 56.4 bits (130), Expect = 2e-08
Identities = 43/115 (37%), Positives = 61/115 (53%)
Frame = +3
Query: 177 NLDFNSEFLNSDFCSPLIIAHRGASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVLV 356
NL+ +S+ +D SPLII+H GASG P+ T +Y ++ GAD I+ + MT DGV V
Sbjct: 335 NLNVSSK---TDHGSPLIISHNGASGDYPDCTDLAYQKAVDDGADVIDCSIQMTSDGVPV 391
Query: 357 ARHDNELSLTTDVASRIEFATRNRTQTVDGSAITGWFTEDFTLAEIKTLRARERI 521
L TT+V R F+ R + D G FT + T A+I + R +I
Sbjct: 392 CMSSINLFETTNV-QRTPFSNR-ASIFKDIQPTPGIFTFNLTWADISSSDLRPKI 444
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 219 SPLIIAHRGASGYVPEHTLGSY--ALSITMGADYIEPDLVMTKDGVLVARHDNELSLTTD 392
+P++IA G SG P+ + +Y ALS T G + ++ +TKDGV + D + T
Sbjct: 53 APIVIAEGGFSGVFPDSSKNAYVFALSSTSGDTVLWCNVQLTKDGVGICLRDLLMDNCTS 112
Query: 393 VASRIEFATRNRTQTVDGSAITGWFTEDFTLAEIKTL 503
++ + + V+G GWF D+T++ ++++
Sbjct: 113 ISQ--AYRAGKKAYLVNGEEKKGWFPIDYTMSSLQSV 147
>04_04_0204 +
23582239-23582338,23582866-23583213,23583357-23583472,
23583565-23584003,23584165-23584203,23584282-23584569,
23584667-23584806,23585080-23585563,23585828-23586090
Length = 738
Score = 51.6 bits (118), Expect = 5e-07
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Frame = +3
Query: 207 SDFCSPLIIAHRGASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDNELSLT 386
+D PLII+H GASG P T +Y ++ GAD I+ + +TKDG+ + L
Sbjct: 345 TDHGKPLIISHNGASGDYPACTDLAYQKAVDDGADVIDCPVQLTKDGIPICMSSINLMDD 404
Query: 387 TDVASRIEFATRNRTQTVDGSAITGWFTEDFTLAEI-KTLRARERIP 524
T VA + +FA++ D ++ G FT + T +I K LR + P
Sbjct: 405 TTVA-KSQFASQTAV-IKDIESVLGVFTFNLTWDDIVKNLRPKISTP 449
>09_02_0535 -
10346395-10346705,10347100-10347175,10348931-10349070,
10349294-10349578,10349677-10349718,10350963-10351461,
10351557-10351723,10352128-10352412,10352695-10352836
Length = 648
Score = 50.4 bits (115), Expect = 1e-06
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Frame = +3
Query: 156 FGIPVNENLDFNSEFLNS---DFCSPLIIAHRGASGYVPEHTLGSYALSITMGADYIEPD 326
F + +E +D S S D +PLII+H G SG P T +Y ++ GAD I+
Sbjct: 356 FPLTASEAIDCFSNLNTSRKTDHGNPLIISHNGGSGDYPGCTDLAYENAVRDGADVIDCS 415
Query: 327 LVMTKDGVLVARHDNELSLTTDVASRIEFATRNRTQTVDGSAITGWFTEDFTLAEIKTLR 506
+ MTKDG+ + +L TTDV + +F + + + + G FT + T +I LR
Sbjct: 416 IQMTKDGIPICMSSIDLLATTDV-QQSKFCSL-LSVIPEIQSKKGIFTFNLTWDDINILR 473
Query: 507 ARERIP 524
+ P
Sbjct: 474 PKISSP 479
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/95 (25%), Positives = 49/95 (51%)
Frame = +3
Query: 219 SPLIIAHRGASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDNELSLTTDVA 398
+PL+IA G SG P+ + ++A + ++ + D+ +TKDGV + D + TD+
Sbjct: 50 APLVIAKGGFSGVFPDSSEYAFAFASSLHIS-LWCDVQLTKDGVGICLRDLLMQNCTDIT 108
Query: 399 SRIEFATRNRTQTVDGSAITGWFTEDFTLAEIKTL 503
+ + ++G+ TGW D+ +A ++ +
Sbjct: 109 E--IYPEGMKAYLINGAQKTGWLPVDYNMASLRNV 141
>12_02_0229 -
15940144-15940451,15940879-15941380,15941594-15941727,
15941954-15942238,15942965-15943463,15944064-15944350,
15944702-15944801
Length = 704
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/96 (35%), Positives = 52/96 (54%)
Frame = +3
Query: 225 LIIAHRGASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDNELSLTTDVASR 404
LII+H GASG P+ T +Y ++ GAD I+ + MTKDG+ + L +TDV +
Sbjct: 299 LIISHNGASGDYPDCTDLAYEKAVGDGADVIDCSIEMTKDGIPICMSSINLYDSTDVQNS 358
Query: 405 IEFATRNRTQTVDGSAITGWFTEDFTLAEIKTLRAR 512
+F++ + + G FT + T EI TLR +
Sbjct: 359 -KFSSL-ASVVPEIQTKPGIFTFNLTWEEISTLRPK 392
>02_04_0415 +
22706964-22707072,22707784-22708077,22708304-22708416,
22708504-22709002,22709106-22709144,22709228-22709515,
22709766-22709905,22710468-22710960,22711082-22711356
Length = 749
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 156 FGIPVNENLDFNSEFLNS--DFCSPLIIAHRGASGYVPEHTLGSYALSITMGADYIEPDL 329
F I +E + S NS D PLII+H GASG P+ T +Y ++T GAD I+ +
Sbjct: 330 FPITPSEAIGCFSNLNNSKTDNAKPLIISHNGASGDYPDCTDLAYQKAVTDGADVIDCPV 389
Query: 330 VMTKDGVLVARHDNELSLTTDVAS 401
+TKDG+ + +L T V++
Sbjct: 390 QVTKDGIPICMSSIDLMDVTTVST 413
>02_03_0403 +
18636953-18637004,18637088-18637299,18638852-18638911,
18639078-18639158,18639273-18639473,18639575-18639670,
18639780-18639976,18640067-18640295
Length = 375
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 258 VPEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDN 371
V E++L S+ + DY+E D+ +TKDG V HDN
Sbjct: 64 VKENSLRSFNEAARFPVDYVEFDVQVTKDGCPVIFHDN 101
>03_05_0730 +
27208293-27208813,27209052-27209173,27210429-27210477,
27210689-27210938,27211474-27211619,27211699-27211846,
27212544-27212612,27212641-27212784
Length = 482
Score = 32.3 bits (70), Expect = 0.34
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Frame = +3
Query: 309 DYIEPDLVMTKDGVLVARHDNELSLTT---DVASRIEFATRNRTQTVDGSAITGWFTEDF 479
DY D+ +D + + EL LT + SR + + ++ DG+ ++D+
Sbjct: 272 DYDINDVDSERDDIHARLQNLELDLTAALHTLRSRFDKVISDMSEG-DGAKAPNGLSDDW 330
Query: 480 TLAEIKTLRARERIPDIRAGNARMDGTFTIPTFQEIISLAKGLQKSHKR 626
E K ++A+E + IRA A ++G + EII K +++ +R
Sbjct: 331 EFEETKVMQAQEELRSIRAKIAVLEGKMAL----EIIEKNKIIEEKQRR 375
>07_01_1213 +
11562671-11562729,11563814-11563907,11564465-11564530,
11564793-11564894,11564992-11565141,11565241-11565384
Length = 204
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 312 YIEPDLVMTKDGVLVARHDNELSLTTDVASRI 407
YIE L M +DGVLV+ D LS+T D +I
Sbjct: 44 YIEVGLCMLQDGVLVSDSD-RLSMTRDNVKKI 74
>07_03_1547 + 27623945-27625612
Length = 555
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 99 SNMKIFGLLVLSFXTVGITFGIPVN 173
S + FGLL+LSF +VG F PV+
Sbjct: 67 SMRRFFGLLLLSFVSVGTLFVAPVS 91
>12_02_0335 - 17669232-17670063,17670619-17672150
Length = 787
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 408 EFATRNRTQTVDGSAITGWFTEDFTLAEIKTLRARERI 521
EF+ +T DGSA+T + T AEI+ +R ++ I
Sbjct: 184 EFSEDCDFETADGSAVTSLHSASSTSAEIQKIRIQDVI 221
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 27.5 bits (58), Expect = 9.7
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 403 VLNSLHATGLKQWTDLLSPVGSRKILHWPK*KRYELENAYQISELATHVWMAPSRFLRFK 582
++N H Q T L+ VG L + R LE+ Y+I+EL + +
Sbjct: 882 LINLRHLYADSQTTALIYAVGQLTKLQELQEFRVRLEDGYKINELRDMKDLRKLYITNLE 941
Query: 583 KSLVWRKV--CKKVTKELLEFIQ 645
K W++ K V K+ L+++Q
Sbjct: 942 KVSSWQEATDAKLVEKKSLDYLQ 964
>01_07_0242 +
42234217-42234320,42234708-42235029,42235377-42235778,
42235921-42236265,42236785-42236854,42237098-42237173,
42237309-42237459
Length = 489
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +3
Query: 249 SGYVPEHTLGSYALSITMGADYIEPDLVMTKD 344
SG +P +T+G+ + G +Y++PD++ D
Sbjct: 239 SGGIPINTIGNDTIVFYRGKNYVQPDVMSPVD 270
>01_06_0843 -
32374830-32374958,32375407-32375482,32375572-32375693,
32375834-32375908,32376007-32376142,32376223-32376311,
32377304-32377466,32379772-32379860,32379983-32380061,
32380195-32380240,32380718-32380801,32380919-32380982,
32381103-32381156,32381279-32381347,32381470-32381778
Length = 527
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 339 KDGVLVARHDNELSLTTDVASRIEFATR-NRTQTVDG 446
KDGV +RH + +S D ++ IE + RT VDG
Sbjct: 165 KDGVAHSRHHHPVSSLADGSTEIESVNQEGRTTRVDG 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,913,053
Number of Sequences: 37544
Number of extensions: 386363
Number of successful extensions: 962
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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