Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0604
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39639| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)            31   0.81 
SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)                  29   2.5  
SB_49574| Best HMM Match : IncA (HMM E-Value=2)                        29   3.3  
SB_44238| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_17438| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-28)         29   4.3  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)                       28   5.7  
SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)                28   7.5  
SB_30815| Best HMM Match : Sas10_Utp3 (HMM E-Value=1)                  28   7.5  
SB_21215| Best HMM Match : DUF1279 (HMM E-Value=0.54)                  28   7.5  
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   7.5  
SB_29183| Best HMM Match : DUF1279 (HMM E-Value=0.89)                  28   7.5  
SB_56068| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_48289| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_39639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = +3

Query: 222 PLIIAHRGASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDN 371
           PL+I HRG      E+TL  +   +   AD  E D+ +TKD  LV  HD+
Sbjct: 46  PLVIGHRGNPVRYQENTLEGFTSLLGTNADGFELDIYLTKDEELVCFHDD 95


>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
          Length = 647

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = +3

Query: 264 EHTLGSYALSI-TMGADYIEPDLVMTKDGVLVARHDNELSLTTDVASRIEFATRNRTQTV 440
           E TLG+  LS  T     ++PD  +TK G++   HD  L+      S IE +  N+T  +
Sbjct: 183 ESTLGAKKLSSDTTSISALKPDAGITKTGIVPPGHDTVLN-----GSEIELSELNKTAVI 237

Query: 441 DGSAITGW-FTE-DFTLAEIK 497
           + +    + FT+   TL+ IK
Sbjct: 238 NHTTPRAFQFTDVSQTLSAIK 258


>SB_36509| Best HMM Match : GDPD (HMM E-Value=5.9e-17)
          Length = 534

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +3

Query: 285 ALSITMGADYIEPDLVMTKDGVLVARHDNELSLTTDVASR 404
           ++ ++ G  ++E D+ +TKD V V  HD+ + L+ + +++
Sbjct: 254 SIRLSQGVHFVEFDVHVTKDHVPVVFHDDTVKLSVETSNQ 293


>SB_49574| Best HMM Match : IncA (HMM E-Value=2)
          Length = 254

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
 Frame = +3

Query: 366 DNELSLTTDVASRIE----FATRNRTQTV-DGSAITGWFTEDFTLAEIKTLRARERIPDI 530
           D E    T  +SR+      ATR+ TQT    SA T + TE      +  L  RE  PD+
Sbjct: 36  DGESIPMTSTSSRMHAAHGMATRSATQTAGTASAETSFITEG-AATRLGLLFLREEYPDL 94

Query: 531 RAGNARMDGTFTIPTFQEIISLAKG 605
                R    +   T  ++  L KG
Sbjct: 95  NENLIRFQSDWRGRTLIQVRDLGKG 119


>SB_44238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 224 TNHCPPRSQRICPRTHPRFLCSQYNH 301
           T  C   S++I P  HP +LC+Q +H
Sbjct: 162 TAFCSGESEKIDPPIHPVYLCTQGSH 187


>SB_17438| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-28)
          Length = 261

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 502 YELENAYQISELATHV-WMAPSRFLRFKKSLVW 597
           Y+L N Y+ S L T   W+AP+ + R ++ L W
Sbjct: 8   YDLINTYEPSYLWTDGDWVAPNEYFRSREFLAW 40


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
 Frame = -2

Query: 538 PALISGMRSLARNVFISASVKSSVNQPVIAD---PSTV*VRLRVANSIRLATSVVKLSSL 368
           P+ ++ M +L  +V ++ S+ S+   P I+    P    V +   N+ R+ATSV+ LSSL
Sbjct: 731 PSYVANMTTLDSSVSLTRSLLSTTLIPSISTSILPYNTTV-IATPNTTRIATSVILLSSL 789

Query: 367 S 365
           +
Sbjct: 790 N 790


>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
          Length = 1167

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 191  IEIKVLIYWNSKSDPHGXKGKHQQPEDFHIANPNIRERTH 72
            ++  V   W S   PH  K  HQQ  ++   +P  + + H
Sbjct: 986  VDTAVRTLWRSVVVPHSAKDTHQQIPEYRRGSPRRQRKNH 1025


>SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)
          Length = 590

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -2

Query: 202 KNSELKSRFSFTGIPKVIPTVXKESTNSPKIFILLTQISVREHTKNT 62
           + SE KS++S T      PT  ++ST++  IFI+   ++ R  +K T
Sbjct: 376 ETSENKSKYSLT------PTATEQSTDNDGIFIVKKLLNCRRRSKTT 416


>SB_30815| Best HMM Match : Sas10_Utp3 (HMM E-Value=1)
          Length = 864

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +3

Query: 414 ATRNRTQTV-DGSAITGWFTEDFTLAEIKTLRARERIPDIRAGNARMDGTFTIPTFQEII 590
           ATRN TQT    SA T + TE      +     RE  PD+     R        T  ++ 
Sbjct: 2   ATRNATQTAGTASAETSFITEG-AATRLGLQSLREEYPDLHENLLRFQSDRRGKTLIQVR 60

Query: 591 SLAKG 605
           +L KG
Sbjct: 61  NLGKG 65


>SB_21215| Best HMM Match : DUF1279 (HMM E-Value=0.54)
          Length = 756

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +3

Query: 414 ATRNRTQTV-DGSAITGWFTEDFTLAEIKTLRARERIPDIRAGNARMDGTFTIPTFQEII 590
           ATRN TQT    SA T + TE      +     RE  PD+     R        T  ++ 
Sbjct: 56  ATRNATQTAGTASAETSFITEG-AATRLGLQSLREEYPDLHENLLRFQSDRRGKTLIQVR 114

Query: 591 SLAKG 605
           +L KG
Sbjct: 115 NLGKG 119


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 357 ARHDNELSLTTD-VASRIEFAT-RNRTQTVDGSAITGWFTEDFTLAEIKTLRARERIPDI 530
           AR  N  +L+TD V +++ FA  RNR+ T    A      +     +  T+    ++ DI
Sbjct: 667 ARLLNLKNLSTDGVNTKVFFADFRNRSNTAQAQATLQRTRDHLATVKADTVDVTNKVYDI 726

Query: 531 RAGNARMDGTFTI 569
           R  NA +DG   +
Sbjct: 727 RTKNA-LDGIHVV 738


>SB_29183| Best HMM Match : DUF1279 (HMM E-Value=0.89)
          Length = 253

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 414 ATRNRTQTV-DGSAITGWFTEDFTLAEIKTLRARERIPDIRAGNARMDGTFTIPTFQEII 590
           ATR+ TQT    SA T + TE    A++     RE  PD+     R        T  ++ 
Sbjct: 2   ATRSATQTAGTASAETSFITEG-AAAKLGLQSLREEYPDLNENLIRFQSDRRGKTLIQVR 60

Query: 591 SLAKG 605
           +L KG
Sbjct: 61  NLGKG 65


>SB_56068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
 Frame = +3

Query: 15  ISVID-TSYTDLFSLVTVFFVCSLTDIWVSNMKIFGLLVLSFXTVGITFGIPVNENLDFN 191
           +S++D TS     + +  F    LT +++    + G+L  SF  +G   G P N  L  N
Sbjct: 128 LSLVDCTSSVVFLTFIGTFPAPYLTALFIGET-LSGMLP-SFVALGQGIGDPCNSTLIQN 185

Query: 192 SEFLNSDFCSPLIIAHRGASGYVPEHTLGSYALSITMGADYI 317
           +  L +DF S  +   +G      E     +++ +  G  ++
Sbjct: 186 TTILVNDFESTDLYVGKGLKFGPEEFFFFLFSMMVVCGLSFL 227


>SB_48289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
 Frame = +3

Query: 366 DNELSLTTDVASRIE----FATRNRTQTVDGSAITGWFTEDFTLAEIKTLRARERIPDIR 533
           D E    T  +SR+      ATR+ TQT D ++    FT +     +     RE+ PD+ 
Sbjct: 36  DGEPIPMTSTSSRMHAAHSMATRSATQTTDETS----FTTEGAATRLGLQSLREKYPDLN 91

Query: 534 AGNARMDGTFTIPTFQEIISLAKG 605
               R        T  ++ +L KG
Sbjct: 92  ENLLRFQSDRRGKTLIQVRNLGKG 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,004,306
Number of Sequences: 59808
Number of extensions: 462372
Number of successful extensions: 1201
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)