Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0604
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125960-1|AAD14735.1| 356|Caenorhabditis elegans Hypothetical ... 62 3e-10
Z78198-2|CAB01567.1| 296|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U00064-3|AAB52706.2| 375|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z81127-1|CAB03386.1| 325|Caenorhabditis elegans Hypothetical pr... 37 0.011
Z47812-12|CAE48507.1| 719|Caenorhabditis elegans Hypothetical p... 36 0.033
Z47812-11|CAA87796.1| 796|Caenorhabditis elegans Hypothetical p... 36 0.033
Z47811-6|CAE48505.1| 719|Caenorhabditis elegans Hypothetical pr... 36 0.033
Z47811-5|CAA87788.1| 796|Caenorhabditis elegans Hypothetical pr... 36 0.033
U49941-2|AAB53873.1| 757|Caenorhabditis elegans Hypothetical pr... 35 0.043
Z47070-2|CAA87343.2| 340|Caenorhabditis elegans Hypothetical pr... 34 0.076
Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical pr... 29 2.1
AC024772-1|AAF60536.2| 242|Caenorhabditis elegans Hypothetical ... 27 8.7
>AF125960-1|AAD14735.1| 356|Caenorhabditis elegans Hypothetical
protein T12B3.3 protein.
Length = 356
Score = 62.1 bits (144), Expect = 3e-10
Identities = 42/119 (35%), Positives = 63/119 (52%)
Frame = +3
Query: 174 ENLDFNSEFLNSDFCSPLIIAHRGASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVL 353
+N +S+ +++ F I HRGA PE+++ +A + GAD IE D+ +TKDG
Sbjct: 47 KNEKCSSKNVDTFFSGFKIGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKA 106
Query: 354 VARHDNELSLTTDVASRIEFATRNRTQTVDGSAITGWFTEDFTLAEIKTLRARERIPDI 530
V HD++L TTD+ I TR D SA T T + T+ +RER+PD+
Sbjct: 107 VLMHDDDLDRTTDMKGPIRDKTRAELDRCDISA-TFKRTAPGDHCRLATV-SRERVPDM 163
>Z78198-2|CAB01567.1| 296|Caenorhabditis elegans Hypothetical
protein F55C5.2 protein.
Length = 296
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/75 (29%), Positives = 39/75 (52%)
Frame = +3
Query: 237 HRGASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDNELSLTTDVASRIEFA 416
HRG+ PE+T+ S + G D +E D+ M+ DGV + HD+ T + ++E +
Sbjct: 36 HRGSPKRAPENTIESLKKAKEDGCDLVEFDIHMSSDGVPLLMHDDTTERTGNAKLKVEHS 95
Query: 417 TRNRTQTVDGSAITG 461
T + + V + + G
Sbjct: 96 TWQQLEAVVLNPVNG 110
>U00064-3|AAB52706.2| 375|Caenorhabditis elegans Hypothetical
protein ZC155.4 protein.
Length = 375
Score = 37.9 bits (84), Expect = 0.006
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Frame = +3
Query: 54 LVTVFFVCSLTDIWVSNMKIFGLLVLSFXTVGITFGIPVNENLDFNSEFLNSDFCSPLII 233
+V + ++ SL + + +++ ++ L+F + + + +E S F S I
Sbjct: 62 IVGIIYILSLLALKFTTIRVI-IVTLAFIPIALMIAFFIFRIPQLTNEPHKSQFFSAWKI 120
Query: 234 A-HRG-ASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDNELSLTTDVASRI 407
HRG A +PE++L +++ G E D+ +T DGV V HD T V
Sbjct: 121 GGHRGSAHDDIPENSLEAFSAVKREGGQLAEMDIQITLDGVPVICHDANTVRVTGVDK-- 178
Query: 408 EFATRNRTQ 434
+ +T N T+
Sbjct: 179 DISTMNITE 187
>Z81127-1|CAB03386.1| 325|Caenorhabditis elegans Hypothetical
protein T22G5.1 protein.
Length = 325
Score = 37.1 bits (82), Expect = 0.011
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Frame = +3
Query: 54 LVTVFFVCSLTDIWVSNMKIFGLLVLSFXTVGITFGIPVNENLDFNSEFLNSDFCSPLII 233
+ F++ +L + +++ +L+L+F + I + +E + F I
Sbjct: 12 IAAFFYLLTLLALKFKTIRLL-ILLLAFLPIAIMLAFFIFRIPQLINETHKTQFFDTWKI 70
Query: 234 A-HRG-ASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDNELSLTTDVASRI 407
HRG A +PE++L +++ + G E D+ +T DGV V HD+ T V I
Sbjct: 71 GGHRGSAHDNIPENSLEAFSAVKSEGGQLAEMDIQITMDGVPVICHDSNTVRVTGVDKEI 130
>Z47812-12|CAE48507.1| 719|Caenorhabditis elegans Hypothetical
protein T05H10.7b protein.
Length = 719
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Frame = +3
Query: 195 EFLNSDFC------SPLIIAHRGA-SGYVP-----EHTLGSYALSITMGADYIEPDLVMT 338
+F++ +C + L + HRGA + Y E+T+ S + GADY+E D+ +T
Sbjct: 309 QFMDQTYCRHWKKRNALEVGHRGAGNSYTKFAMARENTIHSLNTAAKNGADYVEFDVQLT 368
Query: 339 KDGVLVARHD 368
KD + V HD
Sbjct: 369 KDRIAVIYHD 378
>Z47812-11|CAA87796.1| 796|Caenorhabditis elegans Hypothetical
protein T05H10.7a protein.
Length = 796
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Frame = +3
Query: 195 EFLNSDFC------SPLIIAHRGA-SGYVP-----EHTLGSYALSITMGADYIEPDLVMT 338
+F++ +C + L + HRGA + Y E+T+ S + GADY+E D+ +T
Sbjct: 386 QFMDQTYCRHWKKRNALEVGHRGAGNSYTKFAMARENTIHSLNTAAKNGADYVEFDVQLT 445
Query: 339 KDGVLVARHD 368
KD + V HD
Sbjct: 446 KDRIAVIYHD 455
>Z47811-6|CAE48505.1| 719|Caenorhabditis elegans Hypothetical
protein T05H10.7b protein.
Length = 719
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Frame = +3
Query: 195 EFLNSDFC------SPLIIAHRGA-SGYVP-----EHTLGSYALSITMGADYIEPDLVMT 338
+F++ +C + L + HRGA + Y E+T+ S + GADY+E D+ +T
Sbjct: 309 QFMDQTYCRHWKKRNALEVGHRGAGNSYTKFAMARENTIHSLNTAAKNGADYVEFDVQLT 368
Query: 339 KDGVLVARHD 368
KD + V HD
Sbjct: 369 KDRIAVIYHD 378
>Z47811-5|CAA87788.1| 796|Caenorhabditis elegans Hypothetical
protein T05H10.7a protein.
Length = 796
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Frame = +3
Query: 195 EFLNSDFC------SPLIIAHRGA-SGYVP-----EHTLGSYALSITMGADYIEPDLVMT 338
+F++ +C + L + HRGA + Y E+T+ S + GADY+E D+ +T
Sbjct: 386 QFMDQTYCRHWKKRNALEVGHRGAGNSYTKFAMARENTIHSLNTAAKNGADYVEFDVQLT 445
Query: 339 KDGVLVARHD 368
KD + V HD
Sbjct: 446 KDRIAVIYHD 455
>U49941-2|AAB53873.1| 757|Caenorhabditis elegans Hypothetical
protein K10B3.6a protein.
Length = 757
Score = 35.1 bits (77), Expect = 0.043
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = +3
Query: 225 LIIAHRG-ASGYVP-----EHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDNELSLT 386
L I HRG S Y E+T+ S + GADY+E D+ +TKD V HD +
Sbjct: 412 LQIGHRGMGSSYTKNIGQRENTIFSLNEAARRGADYVEMDVQLTKDLKTVVYHD--FHVL 469
Query: 387 TDVASRIEFATRNRTQTVDGSAITGWFTEDFTLAEIKTL 503
VA R + + T + ++ +D TLA++ L
Sbjct: 470 VAVAGR-DSPSSTPTAAGENKSLHEIAIKDLTLAQLNLL 507
>Z47070-2|CAA87343.2| 340|Caenorhabditis elegans Hypothetical
protein T09B9.3 protein.
Length = 340
Score = 34.3 bits (75), Expect = 0.076
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +3
Query: 213 FCSPLIIAHRG-ASGYVPEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDNELSLTT 389
F + II+ RG A G V ++T+ ++ + GAD I D+ MTKDG+L+ + S+ T
Sbjct: 62 FNATSIISDRGEAHGSVHKNTIPAFRQAKQNGADTIVMDVRMTKDGMLIVLLPD--SVDT 119
Query: 390 DVASRI 407
D A+ I
Sbjct: 120 DNATYI 125
>Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical
protein C33G3.6 protein.
Length = 624
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +2
Query: 368 QRTEFDNRRRKSY*IRYTQPDSNSGRICYHRLVHGRFYTGRNKNVTS*RTHTRYQSWQRT 547
+R + + +KSY Y Q NS + Y +G YT RN++V + +++ + + + T
Sbjct: 291 ERQQLEPEMQKSYNNDYRQSSINSHQDKYENSSNGINYTDRNQDVYNNKSYGQQEWLKNT 350
Query: 548 YGWHL 562
HL
Sbjct: 351 SSDHL 355
>Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical
protein F17B5.6 protein.
Length = 363
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 479 KIFREPTGDSRSVHCLSPVACSEFNTTCDVGC-QTQFVVMSGHKYPVFRHY 330
K+ P S+S ++PVAC + T + C Q++F+V+ G + ++++
Sbjct: 120 KVASMPIEISKSARFVAPVACCYYQYTGLLTCDQSKFLVIDGMHFQSYKYF 170
>AC024772-1|AAF60536.2| 242|Caenorhabditis elegans Hypothetical
protein Y40C5A.1 protein.
Length = 242
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 348 PRLSSLPDQVRCNQLPWLY*EHKNLGCVRGHIRW 247
PR++S+PD V N +++ EH+ R H W
Sbjct: 209 PRVTSIPDYVTVNAPSYIFPEHR-YDIKREHYHW 241
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,453,864
Number of Sequences: 27780
Number of extensions: 341312
Number of successful extensions: 814
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -