Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0603
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I462 Cluster: Putative uncharacterized protein PFE019...    33   8.8  
UniRef50_Q4L5U8 Cluster: Succinyl-CoA synthetase beta chain; n=2...    33   8.8  

>UniRef50_Q8I462 Cluster: Putative uncharacterized protein PFE0190c;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFE0190c - Plasmodium falciparum
           (isolate 3D7)
          Length = 662

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 122 LITLNKINK*ISNMKFHTMTSMFV*IQNKKYQYDI 226
           ++ LNKINK   N +F T T +F  +QNK  ++ I
Sbjct: 539 IVPLNKINKESGNFEFFTGTHLFSSLQNKSLKHKI 573


>UniRef50_Q4L5U8 Cluster: Succinyl-CoA synthetase beta chain; n=21;
           Bacteria|Rep: Succinyl-CoA synthetase beta chain -
           Staphylococcus haemolyticus (strain JCSC1435)
          Length = 388

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 4/37 (10%)
 Frame = +1

Query: 376 VTFTIDFPTQAL----KFLVKIYNIFLKKNFSI*EIS 474
           + F I+ P +++    KFL+ +YN+F++K+ SI EI+
Sbjct: 163 IAFNINIPKESINKAAKFLISLYNVFIEKDCSIVEIN 199


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,118,756
Number of Sequences: 1657284
Number of extensions: 10314321
Number of successful extensions: 20997
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20994
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)