Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0603
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    27   1.9  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    26   5.9  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    25   7.8  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   7.8  

>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -3

Query: 117 TDSFIRSLFRTLDFYDSQFYLIKNENFLKFDV---QINLH 7
           T SFI  +   L F D + YLI+  +FL F +   QI LH
Sbjct: 354 THSFIIYIQMQLCFDDLESYLIRRNHFLSFPLCKEQIQLH 393


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 393 LPNSSVKIFSKNLQHFLKKKFFHLRNFN*WFYQFIL*LKTQILAV 527
           L +S++ +FS N+  ++ K   ++ +F  W +  +    TQ +AV
Sbjct: 127 LISSTLLLFSYNVDTWISKGSSYINSFTTWSFLLVFVCATQDIAV 171


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 406 ALKFLVKIYNIFLKKNFSI*EISINGFINLYYN*KH 513
           A +FL K +N+ L K  ++   ++ GF++ YY  KH
Sbjct: 276 ASEFLAKKFNLELPKESNLHTGTLRGFMDEYYE-KH 310


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 247  TFRILGKDIILVFFILNLHKH*SH 176
            +F +  K +  + F+LNLHK+  H
Sbjct: 1155 SFYVCNKSLSYIGFVLNLHKYIQH 1178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,742
Number of Sequences: 5004
Number of extensions: 51344
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)