Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0603
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44566| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_113| Best HMM Match : HALZ (HMM E-Value=0.32)                       28   8.3  

>SB_44566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 571 HCNLRNISTVNIKTYTAKICVFNY 500
           HC L + S V  ++Y AKIC FNY
Sbjct: 103 HCYLGSHSVVISESYNAKICNFNY 126


>SB_113| Best HMM Match : HALZ (HMM E-Value=0.32)
          Length = 255

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = -3

Query: 105 IRSLFRTLDFYDSQFYLIKNE 43
           + SL +++DF+++QF LIKN+
Sbjct: 9   VNSLEKSMDFFNNQFELIKNK 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,784,338
Number of Sequences: 59808
Number of extensions: 296211
Number of successful extensions: 395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)