Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0603
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41730.1 68418.m05074 protein kinase family protein contains ...    31   0.96 
At4g11550.1 68417.m01852 DC1 domain-containing protein contains ...    28   6.8  
At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative si...    27   9.0  

>At5g41730.1 68418.m05074 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 711

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -2

Query: 205 ILNLHKH*SHCMKFHI*NLFIYF 137
           ++NLH++   C++FHI NLF YF
Sbjct: 96  VINLHQN-KDCVEFHIHNLFCYF 117


>At4g11550.1 68417.m01852 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 668

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 405 LSWEVNSECNVCT*SIILNSTY 340
           L WE N  CN CT  I L S Y
Sbjct: 390 LLWEENKRCNACTQPIGLQSFY 411


>At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative
           similar to SP|P51979 ATP-dependent DNA helicase MER3 (EC
           3.6.1.-) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF00270: DEAD/DEAH box helicase, PF02889: Sec63
           domain
          Length = 1113

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 303 YFLTPEKPYKMLCRYYLK*YFKYIRYI 383
           + L PE+P +++ +YYLK  F+ ++YI
Sbjct: 505 FVLKPEEPGRLMTKYYLK--FETMKYI 529


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,160,322
Number of Sequences: 28952
Number of extensions: 219840
Number of successful extensions: 334
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)