Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0602
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 29 0.35
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 29 0.35
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa... 27 2.5
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 27 2.5
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 25 5.7
SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||... 25 7.5
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 7.5
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 9.9
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 25 9.9
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 25 9.9
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 29.5 bits (63), Expect = 0.35
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +1
Query: 13 VKCLGDIAFVLIKTIADMKCLTIAALLFVAGLS-IAEKYTDKYDNIDVDEILENRKLLVP 189
+KCLGD+A + I D C++I ++ +S + ++ T + + + + + LL+P
Sbjct: 376 IKCLGDVALKVPSVIND--CISIFLEIYELNISYMVQEVTVVMETV-LRKYPQKIDLLLP 432
Query: 190 YIKCVLDE 213
Y+ V++E
Sbjct: 433 YLSRVIEE 440
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 29.5 bits (63), Expect = 0.35
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 190 YIKCVLDEGRCTPDGKELKAHIK-DGMQTACAKCTDKQKVSARKIVKHIK--QHEADYWE 360
+I CVL +G + K +G Q C C D K +++KH+K + E+ Y +
Sbjct: 1336 HISCVLTQGAYIDLISCITKFAKLNGNQKFCLSCVDMLKNLEHELIKHLKHMKKESVYSK 1395
Query: 361 QMKAKY 378
+++ +Y
Sbjct: 1396 KLEEEY 1401
>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 280 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKD 390
A +D+++ R V H K H Y + K +DPKD
Sbjct: 12 AASSDEERPEMRS-VSHSKSHLEGYDDDHKIAFDPKD 47
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 2.5
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -3
Query: 146 MLSYLSVYFSAIDKPATNKSAAIVRHFMSAM 54
+++ LSVY+S + +K +V+HFM+++
Sbjct: 540 LMNCLSVYYSKYFEGKDSKKFTLVKHFMNSL 570
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 22 LGDIAFVLIKTIADMKCLTIAALLFVAGLSIAEKYTDKYDNID-VDEILENRKLL 183
L + V IK + + F+ ++I EKY + YD+++ VDE ++ ++
Sbjct: 710 LNTLGPVTIKLACGTEFSFMKPACFLKNVAIGEKYVEPYDHMEIVDETTGDKAVI 764
>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 535 IKYGSNLQTKSHL*FLTKKKQLFCCTTA 452
I+ NL T+S + + + KKQ CC A
Sbjct: 170 IQRSDNLSTQSRMFYKSAKKQNSCCIIA 197
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 302 RCQPERSLNTLSSTKLITGSR*RPNMIPKMNSK 400
+ PE ++S T+ T + P+ +PKMN K
Sbjct: 432 KVNPEPHSESISDTRPSTPRKVPPSTVPKMNPK 464
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 121 KYTDKYDNIDVDEILE 168
+Y DK D DVDEI E
Sbjct: 1038 EYIDKLDKYDVDEIAE 1053
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 392 SSLGSYLAFICSQ*SASCCLMCLTI 318
S + SYL FI S C +CL I
Sbjct: 218 SEIRSYLEFILSNLDLECLTLCLKI 242
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 145 IDVDEILENRKLLVPYIKCVLDEGRCTPD--GKELKAHIKD 261
I D IL+ + P I +LD+GR + G E KA K+
Sbjct: 644 IRTDTILDEEVPVDPLITSILDDGRWWEEMFGSERKAGFKE 684
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,666
Number of Sequences: 5004
Number of extensions: 46081
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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