Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0602
         (556 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)                   30   1.5  
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_56020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)                27   7.8  
SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)
          Length = 1161

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 400 EIYEGFLAGQN*TCYKCLRWY 462
           +I +G L GQ   C++CLRW+
Sbjct: 117 DINDGSLCGQTQCCHRCLRWW 137


>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1175

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 400 EIYEGFLAGQN*TCYKCLRWY 462
           +I +G L GQ   C++CLRW+
Sbjct: 838 DINDGSLCGQTQCCHRCLRWW 858


>SB_56020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = -1

Query: 532 KYGSNLQTKSHL----*FLTKKKQLFCCTTASIYNKFSFDQRGIPRRFL*IHLWDHIWPS 365
           KYG  L T+SHL      +++K+ +   T  S  N FS    G  R  L    W+ I+ S
Sbjct: 95  KYGHRLTTRSHLSEFIPLISEKENMLIKTEISASNGFSVIFDGSTRLVLETRYWNTIF-S 153

Query: 364 SAPSNQL 344
            +P+ +L
Sbjct: 154 HSPAARL 160


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 343  EADYWEQMKAKYDPKDEFKEIY-EGFLAG 426
            +AD W  + A YD +D F +IY  G L G
Sbjct: 5963 DADEWYHVAATYDSRDRFAKIYINGELKG 5991


>SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
          Length = 221

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 208 DEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYD-P 384
           D  +C+ DG+ +   +K   Q A  K +  +K   R++   +   E     + K K+D P
Sbjct: 95  DVAKCSQDGEGVVGPLKQLQQLAGGKASSTKKHQERQVAMVVNLSEVCNGVEAKPKHDSP 154

Query: 385 KD 390
            D
Sbjct: 155 MD 156


>SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 24/107 (22%), Positives = 43/107 (40%)
 Frame = +1

Query: 145 IDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIV 324
           +  D  LE+   + PY  C+ ++      G    + ++   Q   AK   K+  S  +  
Sbjct: 541 VPCDRKLESAFAINPYPTCLYEKALAVRLGLR-DSRVQVWFQNRRAK--SKRNRSGCQSS 597

Query: 325 KHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRWYN 465
            +  Q+E DY+    + Y PK+           G+   CY+ L  Y+
Sbjct: 598 TYRGQNEGDYFSPTASDYSPKNSEYHTNTSDCFGEARECYEELSTYD 644


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,212,543
Number of Sequences: 59808
Number of extensions: 335990
Number of successful extensions: 846
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)