Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0602
(556 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY596807-1|AAT42127.1| 634|Homo sapiens sodium-dependent amino ... 33 0.89
AY591756-1|AAT66171.1| 634|Homo sapiens system B0 neutral amino... 33 0.89
AB209296-1|BAD92533.1| 383|Homo sapiens syntaxin 16 isoform a v... 31 2.7
BC068507-1|AAH68507.1| 778|Homo sapiens chromosome 11 open read... 31 3.6
AK027207-1|BAB15691.1| 724|Homo sapiens protein ( Homo sapiens ... 31 3.6
AY034072-1|AAK56405.1| 2713|Homo sapiens chromodomain helicase D... 29 8.3
AL121674-2|CAI21744.1| 2715|Homo sapiens chromodomain helicase D... 29 8.3
AL031669-3|CAI22255.1| 2715|Homo sapiens chromodomain helicase D... 29 8.3
AL031667-8|CAI42983.1| 524|Homo sapiens chromodomain helicase D... 29 8.3
AL031667-2|CAI42977.1| 2715|Homo sapiens chromodomain helicase D... 29 8.3
AF525085-1|AAN59903.1| 488|Homo sapiens RIGB protein. 29 8.3
>AY596807-1|AAT42127.1| 634|Homo sapiens sodium-dependent amino
acid transporter protein.
Length = 634
Score = 32.7 bits (71), Expect = 0.89
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = -2
Query: 177 LSVLKNFINIYVVILVSVLLGNR*ARHE*KCSNC*TLHVCNGFNQHKSDVTQ 22
+S++ F ++YV I+V ++G R + C + L + NGF+ + +VTQ
Sbjct: 306 VSIINGFTSVYVAIVVYSVIGFRATQRYDDCFSTNILTLINGFDLPEGNVTQ 357
>AY591756-1|AAT66171.1| 634|Homo sapiens system B0 neutral amino
acid transporter protein.
Length = 634
Score = 32.7 bits (71), Expect = 0.89
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = -2
Query: 177 LSVLKNFINIYVVILVSVLLGNR*ARHE*KCSNC*TLHVCNGFNQHKSDVTQ 22
+S++ F ++YV I+V ++G R + C + L + NGF+ + +VTQ
Sbjct: 306 VSIINGFTSVYVAIVVYSVIGFRATQRYDDCFSTNILTLINGFDLPEGNVTQ 357
>AB209296-1|BAD92533.1| 383|Homo sapiens syntaxin 16 isoform a
variant protein.
Length = 383
Score = 31.1 bits (67), Expect = 2.7
Identities = 24/62 (38%), Positives = 33/62 (53%)
Frame = +2
Query: 227 PMGRNLKLISKTECRQRVRSVQINRRCQPERSLNTLSSTKLITGSR*RPNMIPKMNSKKS 406
P+GR+ +S ECR V +V NR+ + ERS TL+ + TG K N+KKS
Sbjct: 323 PLGRSSSCLSPLECRVPVCNVFANRK-KSERSSYTLACSVPGTGG--------KKNNKKS 373
Query: 407 TR 412
R
Sbjct: 374 KR 375
>BC068507-1|AAH68507.1| 778|Homo sapiens chromosome 11 open reading
frame 63 protein.
Length = 778
Score = 30.7 bits (66), Expect = 3.6
Identities = 18/80 (22%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +2
Query: 209 TKAAALPMGRNLKLISKTECRQRVRSVQINRRCQPERSLNTLSSTKLITGSR*RPNMIPK 388
TK++ +P G+ +++ + +R ++I ++C+ + L + S+T+ +T S+ N P+
Sbjct: 338 TKSSNVPRGQPSDMVNDHQPSRRPAKLKIRKQCKHQNGLKS-STTEEVTASQGNQNNPPR 396
Query: 389 -MNSKKSTRDSSLVKTKLVI 445
++ D+S +VI
Sbjct: 397 QQQNQNKPLDTSTKPESIVI 416
>AK027207-1|BAB15691.1| 724|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23554 fis, clone LNG09359. ).
Length = 724
Score = 30.7 bits (66), Expect = 3.6
Identities = 18/80 (22%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +2
Query: 209 TKAAALPMGRNLKLISKTECRQRVRSVQINRRCQPERSLNTLSSTKLITGSR*RPNMIPK 388
TK++ +P G+ +++ + +R ++I ++C+ + L + S+T+ +T S+ N P+
Sbjct: 284 TKSSNVPRGQPSDMVNDHQPSRRPAKLKIRKQCKHQNGLKS-STTEEVTASQGNQNNPPR 342
Query: 389 -MNSKKSTRDSSLVKTKLVI 445
++ D+S +VI
Sbjct: 343 QQQNQNKPLDTSTKPESIVI 362
>AY034072-1|AAK56405.1| 2713|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 2713
Score = 29.5 bits (63), Expect = 8.3
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = +1
Query: 280 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRW 459
AK + + + +KH+++ +D W++++ + K+ ++ E L G N + W
Sbjct: 419 AKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNS-NQLREYQLEGMN---WLLFNW 474
Query: 460 YNR 468
YNR
Sbjct: 475 YNR 477
>AL121674-2|CAI21744.1| 2715|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 2715
Score = 29.5 bits (63), Expect = 8.3
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = +1
Query: 280 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRW 459
AK + + + +KH+++ +D W++++ + K+ ++ E L G N + W
Sbjct: 421 AKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNS-NQLREYQLEGMN---WLLFNW 476
Query: 460 YNR 468
YNR
Sbjct: 477 YNR 479
>AL031669-3|CAI22255.1| 2715|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 2715
Score = 29.5 bits (63), Expect = 8.3
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = +1
Query: 280 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRW 459
AK + + + +KH+++ +D W++++ + K+ ++ E L G N + W
Sbjct: 421 AKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNS-NQLREYQLEGMN---WLLFNW 476
Query: 460 YNR 468
YNR
Sbjct: 477 YNR 479
>AL031667-8|CAI42983.1| 524|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 524
Score = 29.5 bits (63), Expect = 8.3
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = +1
Query: 280 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRW 459
AK + + + +KH+++ +D W++++ + K+ ++ E L G N + W
Sbjct: 123 AKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNS-NQLREYQLEGMN---WLLFNW 178
Query: 460 YNR 468
YNR
Sbjct: 179 YNR 181
>AL031667-2|CAI42977.1| 2715|Homo sapiens chromodomain helicase DNA
binding protein 6 protein.
Length = 2715
Score = 29.5 bits (63), Expect = 8.3
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = +1
Query: 280 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRW 459
AK + + + +KH+++ +D W++++ + K+ ++ E L G N + W
Sbjct: 421 AKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNS-NQLREYQLEGMN---WLLFNW 476
Query: 460 YNR 468
YNR
Sbjct: 477 YNR 479
>AF525085-1|AAN59903.1| 488|Homo sapiens RIGB protein.
Length = 488
Score = 29.5 bits (63), Expect = 8.3
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = +1
Query: 280 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRW 459
AK + + + +KH+++ +D W++++ + K+ ++ E L G N + W
Sbjct: 87 AKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNS-NQLREYQLEGMN---WLLFNW 142
Query: 460 YNR 468
YNR
Sbjct: 143 YNR 145
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,521,505
Number of Sequences: 237096
Number of extensions: 1562493
Number of successful extensions: 2895
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2895
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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