Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0601
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369...    59   4e-09
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    58   9e-09
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86...    54   1e-07
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468...    53   2e-07
03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430...    29   3.4  
01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953           29   4.5  
01_06_1358 - 36637369-36637573,36637643-36638119,36638217-366384...    28   7.9  

>08_01_0417 -
           3692247-3692329,3692442-3692504,3693233-3693350,
           3694084-3694095
          Length = 91

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 32/76 (42%), Positives = 44/76 (57%)
 Frame = +2

Query: 89  QAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTS 268
           Q A   K L    ++   L LY  +KQATVGD + A RPG+   + +AK+DAW  + G S
Sbjct: 9   QYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTA-RPGIFAQRDRAKWDAWKAVEGKS 67

Query: 269 KEDAQKAYIEIVEGLI 316
           KE+A   YI  V+ L+
Sbjct: 68  KEEAMSDYITKVKQLL 83


>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 31/73 (42%), Positives = 43/73 (58%)
 Frame = +2

Query: 95  AANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKE 274
           A  VK L    ++   L LY  +KQATVGD +  +RPG+   + +AK+DAW  + G SKE
Sbjct: 11  AEKVKTLPESTSNEDKLILYGLYKQATVGDVN-TSRPGIFAQRDRAKWDAWKAVEGKSKE 69

Query: 275 DAQKAYIEIVEGL 313
           +A   YI  V+ L
Sbjct: 70  EAMSDYITKVKQL 82


>06_01_0108 -
           860080-860162,860276-860338,860857-860974,861481-861492
          Length = 91

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 30/74 (40%), Positives = 41/74 (55%)
 Frame = +2

Query: 95  AANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKE 274
           A   K L    ++   L LY  +KQATVG      RPG+ +LK + K+DAW  + G SKE
Sbjct: 11  AEKAKTLPDTISNEDKLLLYGLYKQATVGPVT-TGRPGIFNLKDRYKWDAWKAVEGKSKE 69

Query: 275 DAQKAYIEIVEGLI 316
           +A   YI  V+ L+
Sbjct: 70  EAMADYITKVKQLL 83


>04_04_1623 -
           34846056-34846223,34846547-34846644,34846738-34846829,
           34847096-34847202,34847385-34847490,34848108-34848547
          Length = 336

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/73 (41%), Positives = 43/73 (58%)
 Frame = +2

Query: 95  AANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKE 274
           AA+  +  ++P  AQL  LY  +K AT G    A +P  L LK +AK++AWHKL     E
Sbjct: 102 AASAASGTSVPEQAQL-QLYGLYKIATEGPCT-APQPSALKLKARAKWNAWHKLGAMPTE 159

Query: 275 DAQKAYIEIVEGL 313
           +A + YI +V+ L
Sbjct: 160 EAMQKYITVVDEL 172


>03_05_0976 -
           29341981-29342229,29342388-29342621,29342771-29343046,
           29343181-29343457,29343549-29343847,29344021-29344152,
           29344451-29344660,29344812-29344875,29346114-29346260,
           29346477-29346760
          Length = 723

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 608 RKGRKLFHCCSILCFSTLEVPFINV 534
           R GRK   CC IL F+   V F+NV
Sbjct: 418 RSGRKKSACCKILFFTIWNVFFVNV 442


>01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953
          Length = 946

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 192 GSASPTVACLKWAYKLRSWASVGRAFRFFTLAAAW*IFLGETY*SNVGNLLNDDTPVPRA 13
           G+A+ T   L WA +L + A   R   +   A A  +   +   SN+  LL+D      A
Sbjct: 682 GAATATATALSWAQRLEACAGAARGLLYLHTATAKPVIHRDVKSSNI--LLDDGLTAKVA 739

Query: 12  EF 7
           +F
Sbjct: 740 DF 741


>01_06_1358 -
           36637369-36637573,36637643-36638119,36638217-36638446,
           36638545-36638677,36638772-36638860,36638959-36639029,
           36639116-36639185,36640178-36640300,36640492-36640941
          Length = 615

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 65  YVSPRKIYQAAANVKNLKALPT-DAQLLNLYAHFKQATVGDADP 193
           Y S  KIY  A  +    ++ +  A+  N+Y H+  ATV + +P
Sbjct: 454 YPSSTKIYIVAGEIYGGHSMDSLKAEYPNIYTHYSLATVDELEP 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,243,545
Number of Sequences: 37544
Number of extensions: 337572
Number of successful extensions: 749
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)