Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0601
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic... 60 1e-09
At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2) iden... 46 2e-05
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC... 46 3e-05
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar... 33 0.13
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar... 33 0.13
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP... 29 2.8
At3g18900.1 68416.m02400 expressed protein contains Pfam profile... 28 6.6
>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
to acyl-CoA-binding protein (ACBP) [Arabidopsis
thaliana] SWISS-PROT:P57752
Length = 92
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/74 (41%), Positives = 43/74 (58%)
Frame = +2
Query: 95 AANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKE 274
A V L LP++ LL LY +KQA G D +RPG+ +K +AK+DAW + G S E
Sbjct: 11 AEKVNTLTELPSNEDLLILYGLYKQAKFGPVD-TSRPGMFSMKERAKWDAWKAVEGKSSE 69
Query: 275 DAQKAYIEIVEGLI 316
+A YI V+ L+
Sbjct: 70 EAMNDYITKVKQLL 83
>At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2)
identical to acyl-CoA binding protein 2 [Arabidopsis
thaliana] gi|12039034|gb|AAG46057
Length = 354
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +2
Query: 59 DQYVSPRKIYQAAANVKNL-KALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAK 235
D+ S ++ A L + +P+D Q LY +K AT G A +P L + +AK
Sbjct: 105 DEAFSAATLFVTTAAADRLSQKVPSDVQQ-QLYGLYKIATEGPCT-APQPSALKMTARAK 162
Query: 236 FDAWHKLAGTSKEDAQKAYIEIVEGL 313
+ AW KL E+A + YIEIV L
Sbjct: 163 WQAWQKLGAMPPEEAMEKYIEIVTQL 188
>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
putative similar to acyl-CoA binding protein 2
[Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 338
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/85 (32%), Positives = 41/85 (48%)
Frame = +2
Query: 59 DQYVSPRKIYQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKF 238
D+ S + AAA L ++ L LY +K AT G A +P L + +AK+
Sbjct: 95 DEAFSAATAFVAAAASDRLSQKVSNELQLQLYGLYKIATEGPCT-APQPSALKMTARAKW 153
Query: 239 DAWHKLAGTSKEDAQKAYIEIVEGL 313
AW KL E+A + YI++V L
Sbjct: 154 QAWQKLGAMPPEEAMEKYIDLVTQL 178
>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 669
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +2
Query: 98 ANVKN-LKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKE 274
++ KN + P D LL LYA ++QATVG + +P ++K+ +W L
Sbjct: 30 SSAKNVISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTMPSI 87
Query: 275 DAQKAYIEIVE 307
+A + +++I+E
Sbjct: 88 EAMRLFVKILE 98
>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 668
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +2
Query: 98 ANVKN-LKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKE 274
++ KN + P D LL LYA ++QATVG + +P ++K+ +W L
Sbjct: 30 SSAKNVISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTMPSI 87
Query: 275 DAQKAYIEIVE 307
+A + +++I+E
Sbjct: 88 EAMRLFVKILE 98
>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
epsilon subunit) {Homo sapiens}; contains Pfam profile:
PF01602 Adaptin N terminal region
Length = 938
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 670 LNQNKYKTERPSTCILLKHDFEKDASYFIAV 578
+N N YKTE S C+ L F +FI +
Sbjct: 409 INDNHYKTEIASRCVELAEQFAPSNQWFIQI 439
>At3g18900.1 68416.m02400 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547; contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 815
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 649 TERPSTCILLKHDFEKDASYFIAVQYYALAPWKYRS 542
TE P T LLK DF + S + + Y++L ++ +
Sbjct: 649 TETPRTISLLKFDFSIEKSVLVPLPYHSLQSRRFEA 684
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,022,368
Number of Sequences: 28952
Number of extensions: 273488
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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