Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0597
         (574 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    43   0.004
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    37   0.39 
UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  
UniRef50_Q3BQD7 Cluster: Putative membrane protein; n=6; Xanthom...    33   6.3  
UniRef50_Q057D6 Cluster: Cysteinyl-tRNA synthetase; n=1; Buchner...    33   6.3  
UniRef50_Q4YNC3 Cluster: Putative uncharacterized protein; n=1; ...    32   8.3  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 43.2 bits (97), Expect = 0.004
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 258  SGRQRLGSAPGIAEVHGRR 314
            SGRQRLGSAPGIAEVHGRR
Sbjct: 968  SGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 36.7 bits (81), Expect = 0.39
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = +1

Query: 304 MGDGNHSTSGGPYARLPT 357
           MGDGNHS SG PYA LPT
Sbjct: 1   MGDGNHSPSGRPYASLPT 18


>UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 85

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 376 FFFLLPL*ADEHTAHLMWSDYRRPWTSAMPGAEPS-RCL 263
           F F +       T +L+  ++R  WTS +PGA+P  RCL
Sbjct: 25  FIFQIKFSCFRQTIYLVDDNHRHSWTSTIPGAQPDHRCL 63


>UniRef50_Q3BQD7 Cluster: Putative membrane protein; n=6;
           Xanthomonas|Rep: Putative membrane protein - Xanthomonas
           campestris pv. vesicatoria (strain 85-10)
          Length = 210

 Score = 32.7 bits (71), Expect = 6.3
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 349 DEHTAHLMWSD--YRRPWTSAMPGAEPSRCLPLYFIYRFIKLF 227
           DE+   + W+D  +RRPWT  +   E  R L LY   R  +LF
Sbjct: 140 DENGLEVTWADGHFRRPWTDYIRVRENDRVLLLYHNDRLFELF 182


>UniRef50_Q057D6 Cluster: Cysteinyl-tRNA synthetase; n=1; Buchnera
           aphidicola str. Cc (Cinara cedri)|Rep: Cysteinyl-tRNA
           synthetase - Buchnera aphidicola subsp. Cinara cedri
          Length = 476

 Score = 32.7 bits (71), Expect = 6.3
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 27  KHGINYSSKNICII-NIFI*SERSLVSIVTTRLTRMDY 137
           +H + YS KN+ ++ NIFI   RSL+  V T  T++DY
Sbjct: 306 RHPLYYSEKNLLMMKNIFIKIYRSLLDCVVTINTKIDY 343


>UniRef50_Q4YNC3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 148

 Score = 32.3 bits (70), Expect = 8.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 464 HLSNYKFFSKSISY*AKNKYSFEKLIYLRFFFFIALVG 351
           H    K  S  +SY   +KY+++   +L FFFF+ L+G
Sbjct: 14  HFFILKHTSLFLSYLLMHKYTYKYFCFLNFFFFLTLLG 51


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 523,802,099
Number of Sequences: 1657284
Number of extensions: 9938558
Number of successful extensions: 19131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19128
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)