Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0597
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20616| Best HMM Match : Rhomboid (HMM E-Value=5)                    28   4.7  

>SB_20616| Best HMM Match : Rhomboid (HMM E-Value=5)
          Length = 359

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 452 YKFFSKSISY*AKNKYSFEKLIYLRFFFFIALVGRRAYGPPD 327
           Y F S+   Y  K K  F K I++  FF + L+G     P D
Sbjct: 215 YDFKSRGYPYINKRKNPFVKTIFIELFFLV-LLGELFQAPTD 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,881,201
Number of Sequences: 59808
Number of extensions: 297857
Number of successful extensions: 504
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)