Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0597
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50311-6|AAA92310.2|  496|Caenorhabditis elegans Cytochrome p450...    30   1.3  
AF038623-2|AAB94158.1|  342|Caenorhabditis elegans Seven tm rece...    27   7.2  
Z50742-4|CAA90617.1|  498|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U50311-6|AAA92310.2|  496|Caenorhabditis elegans Cytochrome p450
           family protein 33B1 protein.
          Length = 496

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 303 GLQQCQGQSQAAAYRFILFTVLLNYFEFL 217
           G +QC G+  A    F+L   L NYFEFL
Sbjct: 439 GKRQCIGEGLARMEIFLLAANLFNYFEFL 467


>AF038623-2|AAB94158.1|  342|Caenorhabditis elegans Seven tm
           receptor protein 166 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 445 FSQKAFRIEQKINTRLKS*FIYDFFFLLPL*ADEHTAHLMWSDYRR 308
           F  + F +E+K N +  S      +FL+P+    +  HL W  YRR
Sbjct: 111 FIYRFFALERKGNLKYFSGTYLFMWFLIPIAGGINWFHLSWFYYRR 156


>Z50742-4|CAA90617.1|  498|Caenorhabditis elegans Hypothetical
           protein K09A11.4 protein.
          Length = 498

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 303 GLQQCQGQSQAAAYRFILFTVLLNYFEFL 217
           G + C G+  A    F++FT L+  +EF+
Sbjct: 435 GKRNCVGEGLARMELFLIFTALIQKYEFI 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,417,891
Number of Sequences: 27780
Number of extensions: 248567
Number of successful extensions: 502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)