Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0594
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    26   4.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.1  

>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 10  GGARMKTVYCYLKIFKNARRHIIPIAXLKKKYLTF 114
           G AR+K +  +++++    RH +PI  +    + F
Sbjct: 326 GHARIKNIELFIRLYSQMYRHCVPIIEIYDTSIKF 360


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 414  LVSCRIQSGEQLVLNVSGIITWTAMITLPHRG*HVPYFCYSYKK*GQFTN 265
            ++S + Q+  QL LNV   I+  + I + HRG +VP    S  K G   N
Sbjct: 1864 VISSQSQNISQL-LNVYDFISSHSDIFIEHRGRYVPILIDSLYKFGAIPN 1912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,193
Number of Sequences: 5004
Number of extensions: 59550
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)