Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0594
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446...    29   3.2  
10_02_0105 - 5345149-5347833                                           27   9.7  
03_06_0057 - 31326067-31326097,31326453-31326517,31326960-313270...    27   9.7  

>03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,
            4469273-4469314,4469496-4469572,4469671-4469755,
            4469818-4469901,4469988-4470089,4470181-4470279,
            4470794-4470919
          Length = 1193

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 381  IVHQIESDTIPGNTSWPPEWLRCDF 455
            +V  I+ D     T WP EWL  DF
Sbjct: 954  LVESIDEDAGKEGTCWPREWLSADF 978


>10_02_0105 - 5345149-5347833
          Length = 894

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +1

Query: 445 GVTSFNFSNPTVLYLMGFSESTRGVSTTTLRNAYLNSGHYNFIAVDWSRLIVFPWYVTAV 624
           G   F+F+   +L ++ F  S +   T TL        H  ++ ++ S + +FP Y+  +
Sbjct: 561 GKRLFSFNGLHLLRVLHFCSSLK---TCTLPEEINKLVHLRYLGLEGSTVFMFPSYMKGL 617

Query: 625 RNTRYM 642
           RN + +
Sbjct: 618 RNLQIL 623


>03_06_0057 -
           31326067-31326097,31326453-31326517,31326960-31327032,
           31327134-31327185,31327320-31327366,31327694-31327728
          Length = 100

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 304 IWYMSAPVGECDHCC 348
           +WY + P   CD+CC
Sbjct: 40  LWYSARPCSVCDYCC 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,745,101
Number of Sequences: 37544
Number of extensions: 370891
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)