Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0592
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   5.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.5  
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz...    25   9.9  

>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = +3

Query: 429 NPTVLYLMG-----FSESTRGVSTTTLRNAYLNSGHYNFIAVDWSRLIVFPWYVTAVRNT 593
           +P V YLM         S R  +   +R A++ S H NF   D  R++ F     A   +
Sbjct: 347 SPAVTYLMACLLESHFMSIRKGALKAMRKAFM-SAHANFPCGDLKRILHFDTVEQAASFS 405

Query: 594 RYMGKRLAN 620
           RY G  +++
Sbjct: 406 RYYGLEVSD 414


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -1

Query: 374  LVSCRIQSGEQLVLNVSGIITWTAMITLPHRG*HVPYFCYSYKK*GQFTN 225
            ++S + Q+  QL LNV   I+  + I + HRG +VP    S  K G   N
Sbjct: 1864 VISSQSQNISQL-LNVYDFISSHSDIFIEHRGRYVPILIDSLYKFGAIPN 1912


>SPAC4D7.05 |sum1|tif34|translation initiation factor
           eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 164 GDFSSENT--AHFTGTGYSSTDYSGHIRNLNSERKVFFFNF 48
           G F   NT   H  GTGY+S    G++R    ++  F F +
Sbjct: 286 GHFGPINTIAVHPKGTGYASGGEDGYVRVHFFDKNYFDFKY 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,290
Number of Sequences: 5004
Number of extensions: 62570
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)