Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0592
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446...    29   3.4  
08_02_1333 + 26215545-26215759,26217315-26217372,26218263-262183...    28   5.9  

>03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,
            4469273-4469314,4469496-4469572,4469671-4469755,
            4469818-4469901,4469988-4470089,4470181-4470279,
            4470794-4470919
          Length = 1193

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 341  IVHQIESDTIPGNTSWPPEWLRCDF 415
            +V  I+ D     T WP EWL  DF
Sbjct: 954  LVESIDEDAGKEGTCWPREWLSADF 978


>08_02_1333 +
           26215545-26215759,26217315-26217372,26218263-26218342,
           26218606-26218639,26218756-26218896
          Length = 175

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 534 AVDWSRLIVFPWYVTAVRNTRYMGKRLANFVEYLD---RAGVRASSLHV 671
           A++W  L+   W  +  + TR      AN  +Y+D   +A V   SLH+
Sbjct: 51  ALEWLLLLCIHWIASPSKGTRRRYMHQANMHKYVDNKGKANVAIYSLHI 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,882,629
Number of Sequences: 37544
Number of extensions: 402629
Number of successful extensions: 772
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)