Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0589
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    26   0.22 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   2.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.0  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    22   4.7  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.2  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.2  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.2  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.2  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 424 VLTVVMKNWEPLVSAPALAMERTPGPVCLRVKFSSSNLLP*MDFPPVPLWLVKSP 260
           VL + M  +EP    P++     PGP      F  +N LP    PP+PL  + +P
Sbjct: 143 VLNLTMPKYEP---NPSII---DPGPALPPAGFLCNNYLPLPQVPPLPLPPIFAP 191


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 162 TCENFRALCTGEK 200
           T ++FR LCTG K
Sbjct: 408 TLDDFRGLCTGNK 420


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 424 VLTVVMKNWEPLVSAPALAMERTPGPVCLRVKFSSSNLLP*MDFPPVPL 278
           VL + M  +EP    P++     PGP      F  +N  P    PP+PL
Sbjct: 143 VLNLTMPKYEP---NPSII---DPGPALPPTGFLCNNYPPLPQVPPLPL 185


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 246 FMLQGGDFTNHNGTGGKSIYGNKF-EDENFTL 338
           F + GGDF    G+G   +YG  +   EN  L
Sbjct: 78  FWIHGGDFV--TGSGTSEMYGPDYLMSENVVL 107


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +2

Query: 374 CRC*Y*WFPVLHHHCQDLLAGW 439
           C+    WFP    HC      W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +2

Query: 374 CRC*Y*WFPVLHHHCQDLLAGW 439
           C+    WFP    HC      W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +2

Query: 374 CRC*Y*WFPVLHHHCQDLLAGW 439
           C+    WFP    HC      W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +2

Query: 374 CRC*Y*WFPVLHHHCQDLLAGW 439
           C+    WFP    HC      W
Sbjct: 128 CKIDITWFPFDDQHCDMKFGSW 149


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/22 (31%), Positives = 8/22 (36%)
 Frame = +2

Query: 374 CRC*Y*WFPVLHHHCQDLLAGW 439
           C+    WFP    HC      W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,346
Number of Sequences: 336
Number of extensions: 3635
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)