Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0589
(615 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 22 4.1
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 22 4.1
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 22 4.1
AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein. 22 4.1
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 22 4.1
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 22 5.5
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 21 7.2
AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier... 21 7.2
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 21 7.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.6
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 21 9.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.6
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 22.2 bits (45), Expect = 4.1
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 132 ITIFPQWGIVNSDVEEYSW*RHSAGISNVSNLQNHHNDNASS 7
+ I+ W I+ + R A NV++L++ N N S+
Sbjct: 231 LIIYSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSA 272
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 22.2 bits (45), Expect = 4.1
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = +3
Query: 201 GFGYKGSIFHRVIPN 245
GFGY+ ++ ++V+P+
Sbjct: 389 GFGYESNVKYQVVPS 403
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 22.2 bits (45), Expect = 4.1
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = +3
Query: 201 GFGYKGSIFHRVIPN 245
GFGY+ ++ ++V+P+
Sbjct: 389 GFGYESNVKYQVVPS 403
>AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein.
Length = 226
Score = 22.2 bits (45), Expect = 4.1
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = +3
Query: 201 GFGYKGSIFHRVIPN 245
GFGY+ ++ ++V+P+
Sbjct: 15 GFGYESNVKYQVVPS 29
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 22.2 bits (45), Expect = 4.1
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 132 ITIFPQWGIVNSDVEEYSW*RHSAGISNVSNLQNHHNDNASS 7
+ I+ W I+ + R A NV++L++ N N S+
Sbjct: 107 LIIYSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSA 148
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -3
Query: 529 LEVFPDWLPKVSICLTTSMPSTTFPKTTCLPSSQ 428
L V+P++ V +C S ++ KT C +Q
Sbjct: 643 LNVYPEFQENVQLCSEISESYSSNNKTLCKCDAQ 676
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.4 bits (43), Expect = 7.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 57 ISNVSNLQNHHNDN 16
ISN+SN N++N N
Sbjct: 90 ISNISNYNNNNNYN 103
>AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier
protein JHBP-1 protein.
Length = 253
Score = 21.4 bits (43), Expect = 7.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -2
Query: 341 LKGEILVFKLIAVDGLSPSAVMVGE 267
L G + FK++ ++ L+ +V +GE
Sbjct: 55 LAGGLKSFKILPIEPLAVDSVKIGE 79
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.4 bits (43), Expect = 7.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 57 ISNVSNLQNHHNDN 16
ISN+SN N++N N
Sbjct: 328 ISNISNYNNNNNYN 341
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +2
Query: 374 CRC*Y*WFPVLHHHCQDLLAGW 439
C+ WFP HC W
Sbjct: 111 CKMDVAWFPFDDQHCDMKFGSW 132
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +2
Query: 374 CRC*Y*WFPVLHHHCQDLLAGW 439
C+ WFP HC W
Sbjct: 111 CKIDIAWFPFDDQHCDMKFGSW 132
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +2
Query: 374 CRC*Y*WFPVLHHHCQDLLAGW 439
C+ WFP HC W
Sbjct: 111 CKIDITWFPFDDQHCDMKFGSW 132
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +2
Query: 374 CRC*Y*WFPVLHHHCQDLLAGW 439
C+ WFP HC W
Sbjct: 111 CKIDIAWFPFDDQHCDMKFGSW 132
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +2
Query: 374 CRC*Y*WFPVLHHHCQDLLAGW 439
C+ WFP HC W
Sbjct: 111 CKMDIAWFPFDDQHCDMKFGSW 132
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +2
Query: 374 CRC*Y*WFPVLHHHCQDLLAGW 439
C+ WFP HC W
Sbjct: 111 CKIDITWFPFDDQHCDMKFGSW 132
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.0 bits (42), Expect = 9.6
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = -1
Query: 48 VSNLQNHHNDN 16
+SN+ N++NDN
Sbjct: 90 ISNISNYNNDN 100
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +2
Query: 374 CRC*Y*WFPVLHHHCQDLLAGW 439
C+ WFP HC W
Sbjct: 179 CKIDITWFPFDDQHCDMKFGSW 200
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +2
Query: 374 CRC*Y*WFPVLHHHCQDLLAGW 439
C+ WFP HC W
Sbjct: 179 CKIDITWFPFDDQHCDMKFGSW 200
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,299
Number of Sequences: 438
Number of extensions: 4054
Number of successful extensions: 20
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -