Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0587
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0356 + 17141107-17141165,17141502-17141650,17141748-171419...    29   3.4  
12_01_1063 + 10974522-10974776,10975094-10975599,10976243-109763...    28   4.5  
02_05_1229 - 35092135-35092252,35092662-35092764,35093014-350933...    27   7.8  

>10_08_0356 +
           17141107-17141165,17141502-17141650,17141748-17141969,
           17142051-17142187,17142319-17142570,17143915-17144063,
           17144476-17144540,17144633-17144701,17145014-17145144,
           17145218-17145505,17145669-17145811,17145898-17145951,
           17146000-17146080,17149048-17149222,17149223-17149647,
           17149929-17150144,17150279-17150309
          Length = 881

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -2

Query: 434 VFYLLLLKNVFYYYMTHMLLHLS 366
           V+Y+L   +VFYY++TH LL+ S
Sbjct: 630 VYYIL---HVFYYFITHFLLYFS 649


>12_01_1063 +
           10974522-10974776,10975094-10975599,10976243-10976321,
           10976337-10976633,10976712-10976976,10977055-10977425
          Length = 590

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 235 IFMKHSKLDTSIQSYVLRELTYGWQPLGSVPGIAD 131
           IFM+H  ++T + +Y   E  Y W+      G+ D
Sbjct: 268 IFMRHKDIETEMMTYTPIEFEYAWKEFIDKFGLHD 302


>02_05_1229 -
           35092135-35092252,35092662-35092764,35093014-35093315,
           35093849-35094171
          Length = 281

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +3

Query: 87  YGPPDGEWL--HRRPWTSAIPGTEPSGC 164
           Y   DG+W+     PW SAIPG   + C
Sbjct: 227 YEDRDGDWMLVGDVPWESAIPGNSQNHC 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,980,667
Number of Sequences: 37544
Number of extensions: 235697
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)