Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0587
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17392| Best HMM Match : DUF385 (HMM E-Value=1.1)                    30   1.1  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_50726| Best HMM Match : zf-CCHC (HMM E-Value=1.8)                   28   6.1  

>SB_17392| Best HMM Match : DUF385 (HMM E-Value=1.1)
          Length = 942

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +3

Query: 93  PPDGEWLHRRP---WTSAI-PGTEPSGC-QPYVSSLST*LCMDVSS 215
           P  GEW H++P   W S +  G     C +P V S    LC DVSS
Sbjct: 623 PRYGEWRHKKPGYEWRSGLGSGEGAKHCAEPAVRSSGRNLCKDVSS 668


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 449 FNLIYVFYLLLLKNVFYYYMTHMLLHLSMKIHQN 348
           +++I++F++ LL +V Y Y    L H+S+  H N
Sbjct: 100 YHVIWLFHVSLLCHVIYMYHVIWLFHVSLLCHVN 133



 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 449 FNLIYVFYLLLLKNVFYYYMTHMLLHLSMKIHQN 348
           +++I++F++ LL +V Y Y    L H+S   H N
Sbjct: 118 YHVIWLFHVSLLCHVNYMYHVIWLFHVSWLCHVN 151


>SB_50726| Best HMM Match : zf-CCHC (HMM E-Value=1.8)
          Length = 389

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
 Frame = +3

Query: 93  PPDGEWLHRRP----WTSAIPGTEPSGC 164
           P  GEW H+RP    W  A  G + SGC
Sbjct: 107 PRYGEWRHKRPGYEWWPEAAWGPKRSGC 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,563,398
Number of Sequences: 59808
Number of extensions: 290377
Number of successful extensions: 770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)