Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0587
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92830-8|CAB07353.1|  537|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81056-8|CAB02907.2|  307|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z92777-8|CAJ58494.1|  293|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine re...    27   9.3  

>Z92830-8|CAB07353.1|  537|Caenorhabditis elegans Hypothetical
           protein F11A5.9 protein.
          Length = 537

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -2

Query: 452 FFNLIYVFYLLLLKNVFYYYMTHMLLHLSMKIHQNTLKGQVSGAALTSLE 303
           + + +  F L +L   FY + TH+LL   +K  +N+ +  V  A +++ E
Sbjct: 233 YIHAVVTFGLFVLFYFFYRFRTHILLGHFIKFQKNSRENPVRHALVSTKE 282


>Z81056-8|CAB02907.2|  307|Caenorhabditis elegans Hypothetical
           protein F09F3.12 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 483 CSLFSFDILIYS*FACVVI 539
           C++F +D+L+YS   C VI
Sbjct: 168 CAIFQYDLLLYSILGCAVI 186


>Z92777-8|CAJ58494.1|  293|Caenorhabditis elegans Hypothetical
           protein C17H1.13 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 300 KKKNYDSKI*NKNFLLYVQISKFL*NIQNSTHPYKVMCLE 181
           KKK+ +S++ NK   L ++  +F  NIQN  H  ++   E
Sbjct: 15  KKKSNNSELENKRNELQLEEEQFRSNIQNMEHSMRMQAKE 54


>Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical
           protein F19H6.3 protein.
          Length = 914

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 15  NASVLGCHINKC*FFFNVLVGKRAYGPPDGEWLHRRPWTSAI 140
           N+S L  +INK    F  LV  R  G  DG  L+   W++A+
Sbjct: 798 NSSKLLSNINKASILFKNLVQTRGAGDWDGMNLNDGEWSTAV 839


>AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein64 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 485 TNKMIIIKNV*FFNLI-YVFYLLLLKNVFYYYM 390
           T K I + N   + ++ Y++ +L++KN F++ M
Sbjct: 148 TEKPITVANTHIYKILAYLYVILIIKNFFFFLM 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,855,236
Number of Sequences: 27780
Number of extensions: 230817
Number of successful extensions: 587
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)