Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0587
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    25   0.70 
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    25   0.70 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   2.8  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.6  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 256 KKVFILNFRIIVFFFHSKDVNAAPETCPFSVFWCIFIDKCNNM 384
           K+ FI +  ++    H+  VNAAP+  P  VF  +  DK   M
Sbjct: 6   KQAFIYSLALLCL--HAIFVNAAPDWVPPEVFDLVAEDKARCM 46


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 256 KKVFILNFRIIVFFFHSKDVNAAPETCPFSVFWCIFIDKCNNM 384
           K+ FI +  ++    H+  VNAAP+  P  VF  +  DK   M
Sbjct: 6   KQAFIYSLALLCL--HAIFVNAAPDWVPPEVFDLVAEDKARCM 46


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 142 GIADVHGRRCNHSPSG 95
           GI   HGR+CN +  G
Sbjct: 94  GILGTHGRQCNDTSIG 109


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 142 GIADVHGRRCNHSPSG 95
           GI   HGR+CN +  G
Sbjct: 95  GILGTHGRQCNDTSIG 110


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +3

Query: 69  LVGKRAYGPPDGEWLHRRPWTSAIPGTEPSGCQPYVSSLS 188
           L+G R   PP  +W         + G  P   QP +S  S
Sbjct: 408 LIGSRRTSPPPEDWKPLDKCYFCLDGKLPHDDQPPLSPQS 447


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = -1

Query: 315 NVFRMKKKNYDSKI*NKNFLLYVQ 244
           N +     NY+ K+  KN+++ ++
Sbjct: 102 NKYNYNNNNYNKKLYYKNYIINIE 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,041
Number of Sequences: 438
Number of extensions: 2666
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)