Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0587
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09410.1 68418.m01090 calmodulin-binding protein similar to a...    28   5.0  
At3g61880.1 68416.m06950 cytochrome P450, putative similar to cy...    27   6.5  

>At5g09410.1 68418.m01090 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from [Nicotiana tabacum]
          Length = 1007

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 172 YGWQPLGSVPGIADVHGRRCNHSPS 98
           YGW P   +  ++ VHG R   S S
Sbjct: 204 YGWTPAPGMRNVSQVHGNRVRESDS 228


>At3g61880.1 68416.m06950 cytochrome P450, putative similar to
           cytochrome p450 SP:O48927 from [Arabidopsis thaliana]
          Length = 534

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 90  GPPDGEW-LHRRPWTSAIPGTEPSGCQPYVSSLS 188
           GP  G++ LHRR  T+ IPG  P G  P+V S+S
Sbjct: 50  GPAWGKYFLHRRRQTTVIPG--PRGL-PFVGSMS 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,724,514
Number of Sequences: 28952
Number of extensions: 196232
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)