Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0584
         (579 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1FLI2 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  
UniRef50_A5C6H4 Cluster: Putative uncharacterized protein; n=1; ...    32   8.5  

>UniRef50_Q1FLI2 Cluster: Putative uncharacterized protein; n=1;
           Clostridium phytofermentans ISDg|Rep: Putative
           uncharacterized protein - Clostridium phytofermentans
           ISDg
          Length = 515

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 317 NTIHTNLVSVSPYCIFNNICIYVFFFS-FLISSKGIK 424
           N I  NL+ ++ YC +NN+ IYV   S  +++SK ++
Sbjct: 402 NKIPCNLIDIASYCTYNNLMIYVLKDSRTIVASKDLR 438


>UniRef50_A5C6H4 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 807

 Score = 32.3 bits (70), Expect = 8.5
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 320 TIHTNLVSVSPYCIFNNICIYVFFFSFLISSKGIKNGRYL*LNNIESGI 466
           T+  NL+S+S +CI NN  +     SF +  K +++G  L   + + G+
Sbjct: 142 TMKKNLISISQFCITNNALVEFLLSSFFV--KDLRSGAILFQGSTKDGV 188


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,208,075
Number of Sequences: 1657284
Number of extensions: 6702513
Number of successful extensions: 15720
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15715
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39987623712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)