Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0584
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    25   8.0  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    25   8.0  

>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 66  IVTFFFLNTYVPFCQQNSVSV 128
           ++T+F L+ Y PF + + V V
Sbjct: 221 VITYFLLSGYTPFARPSQVEV 241


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 266 II*KERLSAMRVVQLLENTIHTNLVSVSPY 355
           II KE  SA+ +  LLEN    N   + PY
Sbjct: 224 IIPKEEFSAIYIKPLLENPDERNWAKLLPY 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,585
Number of Sequences: 5004
Number of extensions: 32603
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)