Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0584
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0170 - 23268714-23268950,23269040-23269303,23269379-232694...    29   2.7  
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365...    28   6.2  

>04_04_0170 -
           23268714-23268950,23269040-23269303,23269379-23269494,
           23269574-23269792,23269961-23270080,23270170-23270283,
           23271870-23271946,23272527-23272657
          Length = 425

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 242 WQVLVAVIII*KERLSAMRVVQLLENTIHTNLVSVSPYCIFNNICIYVF 388
           W V V  I+  +   + +R V  L +  H NLVS+  YC     C  V+
Sbjct: 159 WPVAVKHIVKNEHAETFLREVTSLSHVRHPNLVSLRGYCDGQEECFLVY 207


>05_01_0004 -
           34967-35149,35340-35501,36078-36225,36309-36385,
           36507-36577,36850-37263,37518-38268
          Length = 601

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 302 VQLLENTIHTNLVSVSPYCIFNNICIYVFFF 394
           V+++    H +LVS+  YCI NN  + V+ F
Sbjct: 347 VEIISRVHHRHLVSLVGYCISNNQRLLVYDF 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,843,553
Number of Sequences: 37544
Number of extensions: 157881
Number of successful extensions: 396
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)