Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0583
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 31 0.14
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 28 1.0
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 27 1.8
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch... 25 5.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 5.4
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom... 25 7.2
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.5
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 9.5
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 25 9.5
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 25 9.5
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 30.7 bits (66), Expect = 0.14
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
Frame = +2
Query: 380 RWLHEAYGLGRFGYAQP-----ERFHYSISGRQER 469
R++HEA+G+ FG + P E+FH++ SG +R
Sbjct: 629 RYVHEAFGMHTFGDSGPAPKLYEKFHFTTSGVAQR 663
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 197 HELHR*ELLQVRSDRSHHCRHYCFHCRVLRLLWRCQREPLH-DNNVFSIP 343
HE+ R V + HH + C + L+ C E H DN + +IP
Sbjct: 1594 HEISRFNSQSVFKSKKHHLKSIVVKCTLQLLMLNCLWELFHSDNMLTNIP 1643
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -2
Query: 443 NGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEE 339
+GS+ + H++ FQ H T + + EY E
Sbjct: 1111 SGSISLKHSKSFQSASTHSTKSSSVEIVREYSSRE 1145
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 390 MKHTDLEDSVMRNLNASITQYPVDKN 467
+K +EDS + N+ AS+ + VDKN
Sbjct: 416 VKVETVEDSFLSNIGASLLSFTVDKN 441
>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = -2
Query: 230 ELVEVLIGEVHVRIRVYFSPDAN 162
E++E GE + +R++F+P+A+
Sbjct: 81 EVIETGWGEFDIMVRIFFAPEAH 103
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 298 APQQPKNATMKTIMPTMMRT 239
AP QPK + +I+PT+ RT
Sbjct: 810 APVQPKTSQASSILPTVPRT 829
>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 329 VFSIPLDHIRG*TGCGHRWLHEAYGL 406
V ++PLDH+ G + W + GL
Sbjct: 55 VLALPLDHVTGSSESMENWFYSILGL 80
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 318 MIITFSVFLLIIFVAELAVGIA 383
MI TFSV L++ + +A+G A
Sbjct: 265 MITTFSVITLLLLLFTIAIGFA 286
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 84 GGMSCVKYLMFCFNLLFAITGLIILIVGIR 173
GG+ +L F + ++FA T ++LI+ +R
Sbjct: 351 GGIGSSDFLNFLYGIIFAGTAGMMLILSLR 380
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 358 TNMIKRNTENVIIMQWFSLTAPQQPKN 278
TN + N+E +II+ W P+ PKN
Sbjct: 52 TNQV--NSEGLIIVTWDGEDDPENPKN 76
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 395 AYGLGRFGYAQPERFHYSISGRQER 469
AYG+ + ++P+RF + RQER
Sbjct: 925 AYGMAKDKLSKPKRFMFLARTRQER 949
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,258
Number of Sequences: 5004
Number of extensions: 41073
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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