Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0583
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1162 + 28093749-28093851,28093939-28093997,28094691-280947...    28   5.4  
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248...    28   5.4  
04_03_1044 - 21965237-21965341,21966130-21966300,21966414-219665...    27   7.2  
04_04_1346 + 32798825-32798900,32799027-32799070,32799163-327992...    27   9.5  
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    27   9.5  

>06_03_1162 +
           28093749-28093851,28093939-28093997,28094691-28094766,
           28094848-28094919,28095023-28095110,28095230-28095485,
           28095583-28095698,28096064-28096127,28096252-28096354,
           28096446-28096554,28097048-28097234
          Length = 410

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 23  FYSVVIQFGGNI*LNNNGPRRWNVLCKVPHVLLQSPVCHYGIDH 154
           F+S+  Q+ G +     GP  W+ L K P  ++        +DH
Sbjct: 6   FWSIYYQYEGAVNEGQRGPTIWDTLTKRPGRVIDFSNADVAVDH 49


>06_03_1104 +
           27623632-27623795,27624052-27624175,27624316-27624832,
           27624943-27625073,27625161-27625567,27625690-27625963,
           27626195-27626814,27627424-27627859
          Length = 890

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -2

Query: 488 DINSLLDVLVYRILSNGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEEY*KRYYH 318
           D N L D+ +  +LSNG    AH  I  VR   +   A S  S     +E+ + +YH
Sbjct: 614 DDNELADLEL--LLSNGESLKAHTAIISVRCPKLLPSAKSLGSDGKITDEWGRSFYH 668


>04_03_1044 -
           21965237-21965341,21966130-21966300,21966414-21966564,
           21968768-21969348
          Length = 335

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 369 AVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCG 515
           AV +AG +  T L   V R  + +++ Y V+  V+ +ID+    +   G
Sbjct: 174 AVLLAGMVNVTTLSSKVYRQRDGTVSLYGVNSLVEASIDVSNCQMSPSG 222


>04_04_1346 +
           32798825-32798900,32799027-32799070,32799163-32799256,
           32799914-32799981,32800105-32800275
          Length = 150

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -2

Query: 233 SELVEVLIGEVH-VRIRVYFSPDANYQDDQSRNGKQEIEAKHEVLYTGHSTFEGHCYSIK 57
           S L+ +L    H +R+        N + +  R+ K E       L   H T +GHC S K
Sbjct: 14  SLLLLLLATRAHGIRLDRQLHEAINNKQEIMRDSKAEQSLNTARLMNKHCTSDGHCNSGK 73

Query: 56  YYRQIV 39
             R +V
Sbjct: 74  VQRPVV 79


>04_04_0214 -
           23674270-23676858,23677574-23680843,23680941-23681119,
           23681200-23681559,23681645-23682086,23682199-23682332,
           23682479-23682680
          Length = 2391

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 335 SIPLDHIRG*TGCGHRWLHEAYGLGRFGYAQPERFH--YSISGRQE 466
           S+P+D   G  G G   L  AY L + GY     F   +++SG  E
Sbjct: 17  SLPVDTRIGIVGAGPSGLSAAYALAKLGYRNVTLFEKCHTVSGMCE 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,699,152
Number of Sequences: 37544
Number of extensions: 272420
Number of successful extensions: 657
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)