Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0583
(537 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 84 7e-17
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 81 5e-16
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 54 9e-08
AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin f... 50 1e-06
AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin f... 50 1e-06
Z67734-1|CAA91527.2| 279|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical ... 44 5e-05
U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin fam... 43 1e-04
Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical pr... 38 0.003
U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin fam... 38 0.003
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 34 0.075
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 33 0.13
AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical ... 33 0.13
L14745-7|AAK71354.1| 234|Caenorhabditis elegans Tetraspanin fam... 33 0.17
AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical ... 32 0.30
Z73908-1|CAA98130.2| 230|Caenorhabditis elegans Hypothetical pr... 31 0.69
Z81086-1|CAB03120.2| 258|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical pr... 29 2.8
X98132-1|CAA66831.1| 387|Caenorhabditis elegans N-acetyllactosa... 29 2.8
U41020-1|AAA82331.2| 470|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical pr... 27 6.5
U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical pr... 27 6.5
U00052-11|AAK21425.2| 514|Caenorhabditis elegans Hypothetical p... 27 8.6
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 83.8 bits (198), Expect = 7e-17
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 1/154 (0%)
Frame = +3
Query: 78 LEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFT-DENFYKXXXXXXXXX 254
+EGG++ VKYL+F NL+ + GL ++IVG ++ ++ DE
Sbjct: 2 VEGGVTIVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDILGDERL--ATPILLLVI 59
Query: 255 XXXXXXXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLN 434
CCGA++EN+C+ ++F+V L ++ E+A I GY H + L
Sbjct: 60 GSLCTLLGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQ 119
Query: 435 ASITQYPVDKNVQKTIDIIQTDLQCCGINSPADW 536
+ +Y + V+ D +CCG+ + +DW
Sbjct: 120 TGMVRYHESRGVESAWDKTHQLFECCGVTNSSDW 153
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 81.0 bits (191), Expect = 5e-16
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 2/149 (1%)
Frame = +3
Query: 96 CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDE--NFYKXXXXXXXXXXXXXX 269
CVKY +F FN++F + G +L+ G+ A+I ++N + Y
Sbjct: 37 CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKLYLDPTWPLLIVGFLTF 96
Query: 270 XXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQ 449
C G+++EN + +S L ++ +AE + G+ Y L++ + LN +
Sbjct: 97 IIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRNLLNDVVVG 156
Query: 450 YPVDKNVQKTIDIIQTDLQCCGINSPADW 536
Y D ++Q ID +Q CCGIN DW
Sbjct: 157 YRDDPDLQLLIDSMQETWMCCGINGADDW 185
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 53.6 bits (123), Expect = 9e-08
Identities = 31/154 (20%), Positives = 65/154 (42%), Gaps = 5/154 (3%)
Frame = +3
Query: 90 MSCVKYLMFCFNLLFAITGLIILIVGI----RAEINSYPYMNFTDENFYKXXXXXXXXXX 257
++ ++ + F FN F ++G+++ +GI + + ++ T ++
Sbjct: 5 VNALRIVTFLFNFAFWLSGVVVFGLGIWLLFDPAASDFFALHSTHPGAFRYVGWFLVGAG 64
Query: 258 XXXXXXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNA 437
C GA K N C + F L++ F ELA + + K ++ V ++
Sbjct: 65 AIIILVGYFGCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYD 124
Query: 438 SI-TQYPVDKNVQKTIDIIQTDLQCCGINSPADW 536
+I +Y + + D +Q +CCG+ + DW
Sbjct: 125 TIRNRYSSETAFKDAFDTVQEKFECCGVKTYTDW 158
>AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin
family protein 14,isoform a protein.
Length = 427
Score = 49.6 bits (113), Expect = 1e-06
Identities = 31/149 (20%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Frame = +3
Query: 93 SCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXXXX 272
+C+K+L+F N + + G+ IL +G+ I + + D
Sbjct: 28 ACLKWLVFLLNSIVFLVGVGILALGVYLFIKDFREVKLVD--IILNPAILISIFGFSICV 85
Query: 273 XXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY-MKHTDLEDSVMRN--LNASI 443
GA+++N ++ F+ + + ++ +AV + + + +TD + + N L ++
Sbjct: 86 VSFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLLYAV 145
Query: 444 TQYPVDKNVQKTIDIIQTDLQCCGINSPA 530
Y ++N+ + +D +Q +L+CCG++S A
Sbjct: 146 KNYHTNRNLAEIMDALQENLECCGVSSIA 174
>AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin
family protein 14,isoform b protein.
Length = 451
Score = 49.6 bits (113), Expect = 1e-06
Identities = 31/149 (20%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Frame = +3
Query: 93 SCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXXXX 272
+C+K+L+F N + + G+ IL +G+ I + + D
Sbjct: 52 ACLKWLVFLLNSIVFLVGVGILALGVYLFIKDFREVKLVD--IILNPAILISIFGFSICV 109
Query: 273 XXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY-MKHTDLEDSVMRN--LNASI 443
GA+++N ++ F+ + + ++ +AV + + + +TD + + N L ++
Sbjct: 110 VSFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLLYAV 169
Query: 444 TQYPVDKNVQKTIDIIQTDLQCCGINSPA 530
Y ++N+ + +D +Q +L+CCG++S A
Sbjct: 170 KNYHTNRNLAEIMDALQENLECCGVSSIA 198
>Z67734-1|CAA91527.2| 279|Caenorhabditis elegans Hypothetical
protein B0198.1 protein.
Length = 279
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 309 NHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNL-NASITQYPVDKNVQKTID 485
N C ++ + + L+ + E + + H E + +L N + Y +D N+ K ++
Sbjct: 92 NRCALVFYLLMLIFSMIMEGCLIYFTFSYHATYEQELNASLPNDILNNYNLDPNIAKAVN 151
Query: 486 IIQTDLQCCGINSPADW 536
+Q D +CCG N+ DW
Sbjct: 152 YLQRDSKCCGSNAFNDW 168
>AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical
protein Y39B6A.6 protein.
Length = 321
Score = 44.4 bits (100), Expect = 5e-05
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 14/152 (9%)
Frame = +3
Query: 102 KYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXXXXXXX 281
KY +F N++F I G ++L +G+ +S + NF E + +
Sbjct: 58 KYGIFTANIVFLIVGGLLLAMGVWLRTDSR-FRNFISERYRQAVQEAFWEAPTLFAFSYI 116
Query: 282 XX-------------CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVM 422
CCG + +I +S+ + ++ VA L+ GI K L+ +
Sbjct: 117 IIVLGAVMMVVAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVELS 176
Query: 423 RNLNASITQYPVDKNV-QKTIDIIQTDLQCCG 515
LN + Y V Q+++D +QT +CCG
Sbjct: 177 DALNYMVQHYYQGPGVVQESLDHLQTAFRCCG 208
>U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin family
protein 17 protein.
Length = 243
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Frame = +3
Query: 291 CGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI-------TQ 449
CGAV + +++ F +FL+ F+A++A+G + + D SV N+ + T
Sbjct: 46 CGAVNRSRFLLLAFVMFLIGTFLADVAMGTLS-LFYKDKVYSVKENVREIVKSKYGVMTS 104
Query: 450 YPVDKNVQKTIDIIQTDLQCCGINSPADW 536
P +K V + ID +Q +CCG P D+
Sbjct: 105 EPENKMVTEFIDKLQFYEKCCGSLGPTDY 133
>Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical
protein C17G1.8 protein.
Length = 291
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +3
Query: 324 ITFSVFLLIIF-VAELAVGIAGYMKHTDLEDSVMRNLN--ASITQYPVDKNVQKTIDIIQ 494
I F + L+++ +A + + +L S++ N+N A +T+ + + T D +Q
Sbjct: 82 IGFVILLILVHGIARITGSLHKEEAKENLRKSMLHNINTTAVVTKIGREIKLSLTWDHLQ 141
Query: 495 TDLQCCGINSPADW 536
+LQCCG+++ DW
Sbjct: 142 RELQCCGVDNYTDW 155
>U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin family
protein 9 protein.
Length = 233
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = +3
Query: 288 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 467
CCGA E+ ++ F ++I+ EL + + S+ + L S Y + KN
Sbjct: 86 CCGAGCESPVLLGLFIFIIVILTAVELGATVFAMTNREEFVSSIQQVLKKSSATYELRKN 145
Query: 468 VQKTIDIIQTDLQCCG 515
++ IQ QCCG
Sbjct: 146 IKP----IQNVFQCCG 157
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 33.9 bits (74), Expect = 0.075
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +3
Query: 321 IITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTD 500
+IT+ V ++++ E+ G+A ++ L D+ ++A T N + IIQ
Sbjct: 101 MITYLVLIIVLVSLEIGCGVAVLVRRNSLHDNTNSLIDAMYT-----TNSVNDLKIIQDK 155
Query: 501 LQCCGINS 524
CCGI +
Sbjct: 156 YNCCGIEN 163
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 69 TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 203
TM L +K+ +F FNL+F + GLI L +G+ ++ Y N
Sbjct: 8 TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52
>AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical
protein Y39E4B.4 protein.
Length = 223
Score = 33.1 bits (72), Expect = 0.13
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +3
Query: 294 GAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQ 473
GAV + ++ + +F++I+F+ E+A+GI +K + +V + S + N Q
Sbjct: 91 GAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVKRRSVRRTVKEYVFDSF-----NMNAQ 145
Query: 474 KTIDIIQTDLQCCG 515
I CCG
Sbjct: 146 ADISAFNFRYNCCG 159
>L14745-7|AAK71354.1| 234|Caenorhabditis elegans Tetraspanin family
protein 2 protein.
Length = 234
Score = 32.7 bits (71), Expect = 0.17
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 294 GAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLN-ASITQYPVDKNV 470
GA+ + ++ T V ++I F+ EL IA + K L + R N +T D
Sbjct: 91 GAISQKKPVLATCLVLIVIFFIMELGGSIALWSKRGSLRSLLYRFANDIYLTNSVFD--- 147
Query: 471 QKTIDIIQTDLQCCGI 518
I IIQ CCG+
Sbjct: 148 ---ISIIQNTYNCCGV 160
>AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical
protein Y45F10B.1 protein.
Length = 241
Score = 31.9 bits (69), Expect = 0.30
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 336 VFLLIIFVAELAVGIAGYMKHTD--LEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQC 509
V + I+FV ++ V I ++ + D + V + + Y + + T+D + T L+C
Sbjct: 99 VLVFIVFVVKI-VAIVMFLANNDHLRREFVGVYRDELVANYHNNSRTKNTLDWVHTSLKC 157
Query: 510 CGINSPADW 536
CG N D+
Sbjct: 158 CGANGCEDF 166
>Z73908-1|CAA98130.2| 230|Caenorhabditis elegans Hypothetical
protein F53B2.2 protein.
Length = 230
Score = 30.7 bits (66), Expect = 0.69
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 336 VFLLIIFVAELAVGIAGYMKHTD--LEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQC 509
V + ++FV ++ V I ++ + D + V + + Y + + T+D + T L+C
Sbjct: 88 VLVFLVFVVKI-VAIVMFLANKDHLRREFVGVYRDELVANYHNNSRTKNTLDWVHTSLKC 146
Query: 510 CGINSPADW 536
CG N D+
Sbjct: 147 CGANGCEDF 155
>Z81086-1|CAB03120.2| 258|Caenorhabditis elegans Hypothetical
protein F53B6.1 protein.
Length = 258
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +3
Query: 303 KENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLN--ASITQ-YPVD--KN 467
KE C + + +V ++I V + G G L NL S+ + Y K
Sbjct: 84 KEMRCFVTSCAVASIVIAVMLIIGGCIGLNFRDQLTHYTPLNLKMLTSLRELYGTHDMKG 143
Query: 468 VQKTIDIIQTDLQCCGIN 521
+ ++ D +Q++ +CCG+N
Sbjct: 144 ITESWDALQSNFKCCGVN 161
>Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical
protein W02B12.11 protein.
Length = 387
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 300 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 476
++ +HC+I +FS LIIFVA + ++++ L D R + A+ Q V+ NVQ+
Sbjct: 1 MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58
Query: 477 T 479
+
Sbjct: 59 S 59
>X98132-1|CAA66831.1| 387|Caenorhabditis elegans
N-acetyllactosamine synthase protein.
Length = 387
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 300 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 476
++ +HC+I +FS LIIFVA + ++++ L D R + A+ Q V+ NVQ+
Sbjct: 1 MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58
Query: 477 T 479
+
Sbjct: 59 S 59
>U41020-1|AAA82331.2| 470|Caenorhabditis elegans Hypothetical
protein T27B1.2 protein.
Length = 470
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 134 KQEIEAKHEVLYTGHSTFEGHCYSIKYYRQIVLLRNKMIHTSA 6
K E+E +H+ +TG FE + ++ R+ L +K IH+ A
Sbjct: 96 KMELE-EHQNSHTGQKPFECDTCNARFNRRSTLWNHKRIHSDA 137
>Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical
protein F30A10.5 protein.
Length = 327
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -3
Query: 187 EFISALMPTIRMINPVMANRRLKQNMRYFTQDIPPSRAIVI---QLNITAKLY 38
+F L P + + P++ + QN+R +IP AI I QL + LY
Sbjct: 54 KFYKILEPGLNFLLPIIDKIKFVQNLREIAIEIPEQGAITIDNVQLRLDGVLY 106
>U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical
protein F53B3.2 protein.
Length = 634
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 312 HCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYP 455
H + + S LLII A G+ + H +D V+RN+N I Q P
Sbjct: 568 HAIRLIRSGGLLIINQALNGGGVMSSIDHMTNDDRVIRNMNIRIKQDP 615
>U00052-11|AAK21425.2| 514|Caenorhabditis elegans Hypothetical
protein K02F3.1 protein.
Length = 514
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -2
Query: 527 RTVYTAALQVCLYDINSLLDVLVYRILSNGSVQVAHNRIFQVRMLHVTSD 378
R + A + + + ++L+ + + + VQ+AH Q+R LHV D
Sbjct: 207 RDSFIQAPEASSFALQTVLENWTFPLQNEQIVQLAHANTLQMRALHVKGD 256
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,782,811
Number of Sequences: 27780
Number of extensions: 236775
Number of successful extensions: 787
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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