Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0583
(537 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 87 1e-19
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.6
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 22 4.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.6
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 21 8.0
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 87.0 bits (206), Expect = 1e-19
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Frame = +3
Query: 87 GMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXX 266
GM +KYL+F FN +FA+ GL IL +G+ + ++ E
Sbjct: 4 GMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILG-VSKQIETGLAFPSITLIVLGSII 62
Query: 267 XXXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY--MKHTDLEDSVMRNLNAS 440
CCGA++E+HCM ITF+ FLL I + ++AV + + +K+ D ++
Sbjct: 63 FVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEI 122
Query: 441 ITQYPVDKNVQKTIDIIQTDLQCCGINSPADW 536
Y ++ + ID IQ +LQCCG++S +D+
Sbjct: 123 FNGYFLNSESKDFIDFIQKNLQCCGVHSLSDY 154
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 92 VLCKVPHVLLQ 124
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 92 VLCKVPHVLLQ 124
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 92 VLCKVPHVLLQ 124
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 92 VLCKVPHVLLQ 124
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 92 VLCKVPHVLLQ 124
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 92 VLCKVPHVLLQ 124
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.8 bits (44), Expect = 4.6
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 44 IVLLRNKMIHTSAN 3
+V+ RNK +HT+ N
Sbjct: 76 VVIARNKSMHTATN 89
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 4.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 92 VLCKVPHVLLQ 124
+LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 4.6
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 92 VLCKVPHVLLQ 124
+LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 21.0 bits (42), Expect = 8.0
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -3
Query: 166 PTIRMINPVMANRRLKQNMR 107
PT++ PV NR+L +++
Sbjct: 253 PTVQQHQPVTVNRQLNSDVQ 272
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,978
Number of Sequences: 438
Number of extensions: 2759
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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