Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0582
(679 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 249 1e-66
SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38) 29 2.6
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_54239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82) 29 4.6
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3) 28 6.0
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 28 6.0
SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 249 bits (610), Expect = 1e-66
Identities = 119/193 (61%), Positives = 139/193 (72%)
Frame = +3
Query: 33 SLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 212
+L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP VHSRAR
Sbjct: 31 TLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIVHSRAR 90
Query: 213 VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 392
VRK EAR KGRH G GKR+GTANARMPQK +W AKKID H+YHS
Sbjct: 91 VRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHS 150
Query: 393 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXX 572
LYMK+KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQ
Sbjct: 151 LYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQRRDDRMEQKRK 210
Query: 573 XLLQTFAREDEAA 611
+L +A+E+EAA
Sbjct: 211 DMLSAYAKEEEAA 223
>SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)
Length = 352
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Frame = -3
Query: 293 HTRIGSTSSLTKATVTTLST----CLCVFADTGAGVDCYRFLDDETILDHLTD-VLSGVG 129
+T +G S+ T+T LS CL + G + + L T+ +L+ +
Sbjct: 5 NTSVGYNSTSAGFTITDLSLLPAYCLAISVGLGGNGLVIGVVRKKRSLHTTTNYLLANLA 64
Query: 128 VCDLIDFIWIQPHLLFT-TSHNRG 60
+ DL++ IW P L+ T H RG
Sbjct: 65 LADLLNLIWCIPGLVLTFVEHPRG 88
>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 204 RARVRKNTEARRKGRHCGFGKRRGTANAR 290
+A RK RR+ R G K+R TANAR
Sbjct: 17 KANSRKKRRRRRRPRLTGLSKQRQTANAR 45
>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 333 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 211
++ + F+P V + W++ ++ H+DDPF V C H
Sbjct: 72 IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114
>SB_54239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -1
Query: 160 IILRMFCLELVFAISLISFGSNHTFFLPHRITEAASLFCSLRDSS*HGEI 11
+I +F E + L++ N F PH+++EA S C +S+ +GE+
Sbjct: 130 LIKHLFNREDITTSPLLADIKNTKFVPPHKVSEALSRLCPPFESNMNGEL 179
>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
Length = 646
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 333 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 211
++ + F+P V + W++ ++ H+DDPF V C H
Sbjct: 72 IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114
>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
Length = 248
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -3
Query: 575 FLLLGGNTFLAALAC 531
F L+GG TFLAALAC
Sbjct: 70 FALMGGLTFLAALAC 84
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 559 PPRRRNCCRPSLEKTKPRLPLRSK 630
PP +N +P ++KTKP PL ++
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPLLTR 222
>SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 381 DACQSSWQFCTSGAIFLEPF-VFVPIVPSVAYAHW 280
D + S Q C FLEP VF P+ PS A+AH+
Sbjct: 192 DIVEKSQQACREHEAFLEPMGVFSPLPPS-AHAHF 225
>SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 12 ISPCQDESLKLQKRLAASVMRCGKKKVW---LDPNEINEIANTNSRQNIRKMIKDGLVIK 182
IS C L+KR+ + R ++ +D NEINE R RK D L
Sbjct: 386 ISVCLRYKAILKKRIESKGTRSERRPAACHSVDVNEINEAEKEIVRLVQRKAFADELAAL 445
Query: 183 KPVAVHSRAR 212
KP++ + R
Sbjct: 446 KPISTEASTR 455
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,458,242
Number of Sequences: 59808
Number of extensions: 442938
Number of successful extensions: 1291
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -