Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0582
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    26   0.38 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    26   0.38 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   6.2  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 556 LPPRRRNCCRPSLEKTKPRLPLRSK 630
           + PR++NCCR  L K     P RSK
Sbjct: 393 MQPRKKNCCRSWLSK----FPTRSK 413


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 556 LPPRRRNCCRPSLEKTKPRLPLRSK 630
           + PR++NCCR  L K     P RSK
Sbjct: 393 MQPRKKNCCRSWLSK----FPTRSK 413


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 290 TRIGSTSSLTKATVTT--LSTCLCVFADTGAG 201
           ++ GST + T ATVTT   +T L   + TG G
Sbjct: 206 SKAGSTDASTPATVTTTGATTTLPAASATGTG 237


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 382 RCLSIFLAVLYFRSNFLRTLCLC 314
           RC+ +FL+V+   S F+  +  C
Sbjct: 6   RCIYLFLSVILITSYFVTPVMPC 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,026
Number of Sequences: 438
Number of extensions: 4195
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)