Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0582
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi...   214   4e-56
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...   213   9e-56
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi...   211   3e-55
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim...    46   3e-05
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    29   3.7  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    28   4.9  
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p...    28   6.5  
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain...    28   6.5  
At5g67310.1 68418.m08488 cytochrome P450 family protein                27   8.6  
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    27   8.6  
At3g04340.1 68416.m00459 FtsH protease family protein similar to...    27   8.6  
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila...    27   8.6  

>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
           to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
          Length = 209

 Score =  214 bits (523), Expect = 4e-56
 Identities = 98/156 (62%), Positives = 117/156 (75%)
 Frame = +3

Query: 33  SLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 212
           SLK+QKRLAASVM+CGK KVWLDPNE  +I+  NSRQNIRK++KDG +I+KP  +HSR+R
Sbjct: 3   SLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62

Query: 213 VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 392
            R   EA+RKGRH G+GKR+GT  AR+P K LW                +KKIDRH+YH 
Sbjct: 63  ARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHD 122

Query: 393 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 500
           +YMK KGNVFKNKRVLME IH+ KAEKAR K L+DQ
Sbjct: 123 MYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQ 158


>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score =  213 bits (520), Expect = 9e-56
 Identities = 97/156 (62%), Positives = 118/156 (75%)
 Frame = +3

Query: 33  SLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 212
           SLKLQKRLA+SV++CGK+KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR+R
Sbjct: 3   SLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62

Query: 213 VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 392
            R+   A+RKGRH G+GKR+GT  AR+P K LW                 KKIDRH+YH 
Sbjct: 63  ARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHD 122

Query: 393 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 500
           +YMK KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 123 MYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
           to ribosomal protein L19 GI:36127 from [Homo sapiens]
          Length = 214

 Score =  211 bits (516), Expect = 3e-55
 Identities = 97/156 (62%), Positives = 116/156 (74%)
 Frame = +3

Query: 33  SLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 212
           SLKLQKRLAASVM+CGK KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR+R
Sbjct: 3   SLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62

Query: 213 VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 392
            RK   A+ KGRH G+GKR+GT  AR+P K LW                 KKID+H+YH 
Sbjct: 63  ARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHD 122

Query: 393 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 500
           +YM+ KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 123 MYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
           similar to 60S ribosomal protein L19-3
           (Swiss-Prot:P49693) [Arabidopsis thaliana]
          Length = 101

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +3

Query: 363 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 473
           KKID+ +Y H ++MK KG V+KNK VLME +H+   E+
Sbjct: 29  KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1406

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -1

Query: 499  WSLSIFVLAFSAFFLWMYSMSTRL 428
            W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 165 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 284
           D +  KK + + +  ++RKN + RR+G   G G RR  A+
Sbjct: 77  DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116


>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
           protease, putative similar to cysteine proteinase RD21A
           precursor (thiol protease) GI:435619, SP:P43297 from
           [Arabidopsis thaliana]
          Length = 463

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 187 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 92
           GFL   P +++L M  +     +S+IS+  NH
Sbjct: 2   GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33


>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein weak similarity
            to  ubiquitin-specific protease 12 [Arabidopsis thaliana]
            GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1663

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 518  IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 402
            IA  L    KHL+P L+SL+P  V H EH L    +  RL
Sbjct: 974  IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013


>At5g67310.1 68418.m08488 cytochrome P450 family protein
          Length = 507

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 417 HYPSPSCRVSGIDACQSSWQFCTSGAIFLEPFVF 316
           H  S  C V+G D  + +W F  + AI  +P V+
Sbjct: 382 HASSTDCEVAGFDIPRRTWLFINAWAIQRDPNVW 415


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 201 SRARVRKNTEARRKGRHCGFGKRRGTANARMPQKEL 308
           SR+R R  + +R +GR     + R  + ++ P+K+L
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDL 244


>At3g04340.1 68416.m00459 FtsH protease family protein similar to
           chloroplast FtsH protease [Arabidopsis thaliana]
           GI:1483215; contains Pfam profiles PF01434: Peptidase
           family M41, PF00004: ATPase AAA family
          Length = 960

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 360 AKKIDRHLYHSLYMKAKGNVFKNKRVL 440
           A K+++ +Y   Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895


>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
           to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
           {Mus musculus}
          Length = 865

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 165 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 278
           D L++      H R+ VR+    R +GR  G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,085,061
Number of Sequences: 28952
Number of extensions: 307919
Number of successful extensions: 853
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)