Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0581
(343 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 29 0.20
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 26 1.4
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 25 4.3
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 24 5.6
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc... 24 7.5
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 24 7.5
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 23 9.8
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 23 9.8
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 23 9.8
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 23 9.8
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me... 23 9.8
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 23 9.8
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 29.1 bits (62), Expect = 0.20
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 166 SHQISANKSHE-RMKESANTSSVQRHWASTRVVKMS*RYRRLRLAT 32
+H+ S N ++ + + N+SS RH +T K+ R RRLR +T
Sbjct: 594 NHERSPNGNNNLKFSKDPNSSSPSRHVVATPTDKLGTRKRRLRYST 639
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 26.2 bits (55), Expect = 1.4
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 125 LHPLVALVRTYLVAHYFHSRRPHPNSTYGTERTTRSLP 238
L+ L ++ +A YF PHPN R + LP
Sbjct: 67 LNELKKIISNSELAQYFRPAPPHPNDRNRRRRKSNRLP 104
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 4.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 245 VVEAGNGWFSLFRKWNWGEVSVSENNEPPDKCEQEPRE 132
+ E NG+F L + + V E E PD E+E ++
Sbjct: 118 LAEQPNGYFVLNDIFRFLREDVEEEEESPDAVEKEKKD 155
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 24.2 bits (50), Expect = 5.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 221 FSLFRKWNWGEVSVSENNEPPD-KCEQEPREDE-GKRKH 111
FSL K N +++ +ENN D K EP E+ G RK+
Sbjct: 671 FSLRHKKNASQITNNENNGNDDIKKGDEPEEEHVGLRKN 709
>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 23.8 bits (49), Expect = 7.5
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -3
Query: 260 SKGVDVVEAGNGWFSLFRKWNWGEVSVSENNEPPDKCEQEPREDEGKRK 114
+KG DV+E G+G + F + W +++ EP +K +E + K+K
Sbjct: 84 AKG-DVLEVGSGPGTNFPFYKWKKINTLTLVEPAEKM-REIADARAKKK 130
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 23.8 bits (49), Expect = 7.5
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = -1
Query: 286 VSTEKRKQPVKELTLLRQGTGGSLCSVSGIGVRSP*VKIMSHQISANKSHERMKESANTS 107
V T R + +KE+ + G GG ++GI S + +++ I + +E+ ++ TS
Sbjct: 443 VPTLVRSKAIKEVAIRVAGAGGQFSIIAGIPNASE--EPVANGIKSEPENEKKLKTEETS 500
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 23.4 bits (48), Expect = 9.8
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -1
Query: 286 VSTEKRKQPVKELTLLRQGTGGSLCSVSGIGVRSP*VKIMSHQISANKSHERMKESANTS 107
+ +K+K ++EL + + S ++ R+P +K++ +S S+E S+ TS
Sbjct: 53 LEVQKKKDQIRELERIYEMNPKSFLTLR----RTPALKLLPETLSVELSNEVNLTSSTTS 108
Query: 106 S 104
S
Sbjct: 109 S 109
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 23.4 bits (48), Expect = 9.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 80 EGREDVLKVSAPALSHPRAES 18
E ++DV KV A ALSH R S
Sbjct: 967 ENKDDVDKVIALALSHSRIGS 987
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 286 VSTEKRKQPVKELTLLRQGTGGSLCSVSGI 197
VS K+K+ ++ LL+ + L S+SGI
Sbjct: 719 VSATKKKEFTRQYQLLKNISSNKLGSISGI 748
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 92 VALDAASVCAFLHPLVALVRTYLVAHYFHS 181
++L + V +FLH + TY + YF S
Sbjct: 350 LSLSSVMVTSFLHYYIMSTVTYYIPIYFQS 379
>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 175 KIMSHQISANKSHERMKESANTSSV 101
KI HQI HER++ TS V
Sbjct: 172 KINFHQIDVLNEHERVESLLQTSHV 196
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 23.4 bits (48), Expect = 9.8
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +2
Query: 188 PHPNSTYGTERTTRSLPQQRQLLYW 262
P P T TTRS+P + +W
Sbjct: 394 PQPPLYNSTLTTTRSIPANKPTFFW 418
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,406,735
Number of Sequences: 5004
Number of extensions: 25859
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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