Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0581
(343 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1527 - 38006174-38006815,38006920-38007420 34 0.025
08_02_0949 - 22920363-22920685,22922621-22922824,22923170-229232... 30 0.55
01_06_0149 - 27011183-27011836 29 0.72
06_01_0908 - 7006160-7007488 28 1.7
02_05_1167 - 34638709-34639104,34640653-34642158 28 1.7
01_06_1018 - 33870063-33870209,33872044-33872094 28 2.2
12_02_0247 + 16409988-16411367 27 2.9
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 27 2.9
02_05_0883 - 32481502-32483085 27 2.9
05_04_0234 + 19282196-19282818,19282948-19283347 27 3.9
11_06_0766 - 27115441-27115760,27115878-27116025,27116213-271174... 27 5.1
09_01_0005 - 193214-193228,193659-193776,193876-194072,194534-19... 27 5.1
03_01_0181 + 1464082-1464626,1465327-1465480 27 5.1
02_03_0120 + 15463163-15465250 27 5.1
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 26 6.7
10_02_0103 - 5320938-5321145,5321254-5321819 26 6.7
05_05_0175 + 22966151-22967614 26 6.7
05_06_0137 + 25936516-25936606,25936716-25937268,25937436-259379... 26 8.9
02_05_0559 - 29953309-29953722,29953852-29953938,29954280-299543... 26 8.9
02_04_0090 - 19643182-19643322,19644192-19644335,19644563-196446... 26 8.9
>01_06_1527 - 38006174-38006815,38006920-38007420
Length = 380
Score = 34.3 bits (75), Expect = 0.025
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 177 THGDLTPIPLTEQREPPVPCLNNVNSFTGCFLFS 278
T GD+TP + R VPC+ N T CFLF+
Sbjct: 326 TAGDVTPELILSIRRSEVPCMYNSRPTTACFLFA 359
>08_02_0949 -
22920363-22920685,22922621-22922824,22923170-22923263,
22923376-22923470,22923612-22923783
Length = 295
Score = 29.9 bits (64), Expect = 0.55
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +2
Query: 35 G*AQAPIPSGHLHDPRGRPVALDAASVCAFLHPLVALVRTYLVAH 169
G A PIP GH H P GR + L+ P V T L AH
Sbjct: 30 GAAGDPIPHGHGHTPHGRELELELFFPKCMESPASEAVVTGLPAH 74
>01_06_0149 - 27011183-27011836
Length = 217
Score = 29.5 bits (63), Expect = 0.72
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 266 AASKGVDVVEAGNGWFSLFR--KWNWGEVSVSENNEP 162
AAS G D +A N W L++ +W +G +SVS N P
Sbjct: 161 AASPGSD--DAENVWLELYQVGRWGFGRLSVSAANPP 195
>06_01_0908 - 7006160-7007488
Length = 442
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 95 ALDAASVCAFL-HPLVALVRTYLVAHYFH 178
ALDA + CA LVALVRTY H+ H
Sbjct: 298 ALDAIAGCADCKRELVALVRTYTPDHFEH 326
>02_05_1167 - 34638709-34639104,34640653-34642158
Length = 633
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 284 FNRKEEAASKGVDVVEAGNGWFSLFRKW-NWGEVSVSENNEPPDKCEQEPREDEG 123
F + E G D ++A NG + W WG ++N+E P K Q +++ G
Sbjct: 366 FEERCEEGDGGADHLDA-NGVAKDKKGWFGWGGKKGTKNDEKPSKANQGSKDESG 419
>01_06_1018 - 33870063-33870209,33872044-33872094
Length = 65
Score = 27.9 bits (59), Expect = 2.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 80 RGRPVALDAASVCAFLHP 133
+GRP+AL++ C F HP
Sbjct: 33 QGRPLALESVPACCFYHP 50
>12_02_0247 + 16409988-16411367
Length = 459
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 128 HPLVALVRTY--LVAHYFHSRRPHPNSTY 208
HP+V Y +V+H F +RPHP S Y
Sbjct: 251 HPVVVNGAAYFLVVSHSFDRQRPHPPSHY 279
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 200 NWGEVSVSENNEP-PDKCEQEPREDEGKRKH*QRPAPLG 87
+W +S + N P P C P E +GK+ +PA G
Sbjct: 38 SWPALSEAARNPPKPPPCIDSPSEGQGKQSSRHKPARRG 76
>02_05_0883 - 32481502-32483085
Length = 527
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 77 PRGRPVALDAASVCAFLHPLVALVRTYLVAHYFHSRRPH 193
P R +AL + L P L+ T LV YF SR PH
Sbjct: 118 PLARRLALSVHARVLKLFPSHLLLSTCLVRFYFASRLPH 156
>05_04_0234 + 19282196-19282818,19282948-19283347
Length = 340
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -3
Query: 278 RKEEAASKGVDVVEAGNGWFSL-FRKWNWGEVSVSENNEPPDKCEQEP 138
++E AA G E GW + ++WG E N P D C+ P
Sbjct: 141 KREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSP 188
>11_06_0766 -
27115441-27115760,27115878-27116025,27116213-27117417,
27117510-27117753,27120181-27120357
Length = 697
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = -3
Query: 290 LSFNRKEEAASKGVDVVEAGN 228
++ ++E+AAS G+++V+AGN
Sbjct: 25 MTVEKEEQAASTGMEIVKAGN 45
>09_01_0005 -
193214-193228,193659-193776,193876-194072,194534-195493
Length = 429
Score = 26.6 bits (56), Expect = 5.1
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 148 NKSHERMKESANTSSVQRHWAS-TRVVKMS*RYRRLRLATLVPNP 17
N+ + ++KE A + ++ +R K S +YRRL L LVP P
Sbjct: 244 NQGNTKVKEMARVNKERKPAPLLSRAEKRSDKYRRLPLDQLVPPP 288
>03_01_0181 + 1464082-1464626,1465327-1465480
Length = 232
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 7 PGLQDSARGWLSAGADTFRTSS 72
P + SAR W SAG +FR+SS
Sbjct: 115 PERRGSARRWDSAGGSSFRSSS 136
>02_03_0120 + 15463163-15465250
Length = 695
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 68 LHDPRGRPVALDAASV 115
LHDP G VALDA S+
Sbjct: 173 LHDPDGNHVALDAGSI 188
>11_01_0682 -
5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -3
Query: 281 NRKEEAASKGVDVVEAGNGWFSLFRKWNWGEVSVSENNEPPDKCEQEPRED 129
N+KEE KG ++ N + LF+ N + + + DKCE+ +E+
Sbjct: 445 NKKEED-DKGHRTMDDENFFRRLFKDKNEEKKGAAHDRNDDDKCEEGDKEN 494
>10_02_0103 - 5320938-5321145,5321254-5321819
Length = 257
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 79 RVVKMS*RYRRLRLATLVPNPAA 11
R+VK+S R+R++ L VP PAA
Sbjct: 230 RLVKISIRHRQIWLRKYVPRPAA 252
>05_05_0175 + 22966151-22967614
Length = 487
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 105 ASSATGRPRGS*RCPEGIGACA*PPSCRILQP 10
+SSA G PR + RC G G+ PPS L P
Sbjct: 82 SSSAAGTPRSAARCGGG-GSPGAPPSSPPLSP 112
>05_06_0137 +
25936516-25936606,25936716-25937268,25937436-25937932,
25938030-25938090,25938411-25938482,25938563-25938634,
25938730-25938810,25938918-25939081,25939174-25939442,
25939531-25939657,25939778-25939846,25939944-25940136,
25940232-25940733
Length = 916
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 218 SLFRKWNWGEVSVSENNEPPD 156
SLF +WN+G +S +E PD
Sbjct: 198 SLFGRWNFGPISTTEFIRYPD 218
>02_05_0559 -
29953309-29953722,29953852-29953938,29954280-29954385,
29954468-29954559,29955187-29955438
Length = 316
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 69 RCPEGIGACA*PPSCRILQ 13
RCP AC PP CR Q
Sbjct: 31 RCPADTSACRRPPPCRRAQ 49
>02_04_0090 -
19643182-19643322,19644192-19644335,19644563-19644626,
19644710-19644796,19645371-19645513,19645706-19645771,
19645954-19646046,19646165-19646230,19646363-19646433,
19646882-19646982,19647217-19647317,19647421-19647528,
19647639-19648064
Length = 536
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 161 VAHYFHSRRPHPNS 202
VAH+ H R PHP S
Sbjct: 47 VAHHHHGRHPHPPS 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,556,191
Number of Sequences: 37544
Number of extensions: 227034
Number of successful extensions: 747
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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