Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0581
         (343 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9469| Best HMM Match : IRK (HMM E-Value=0)                          66   7e-12
SB_58706| Best HMM Match : IRK (HMM E-Value=0)                         61   2e-10
SB_43914| Best HMM Match : IRK (HMM E-Value=5.3)                       37   0.004
SB_41714| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.015
SB_57503| Best HMM Match : Brevenin (HMM E-Value=2)                    35   0.015
SB_39907| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.99 
SB_30823| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15)                 28   1.7  
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)                   27   3.0  
SB_1505| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.3  
SB_59353| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)                 26   7.0  
SB_21415| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.0  
SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_55820| Best HMM Match : WD40 (HMM E-Value=0.18)                     26   9.2  
SB_53823| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_33207| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_9469| Best HMM Match : IRK (HMM E-Value=0)
          Length = 520

 Score = 66.1 bits (154), Expect = 7e-12
 Identities = 38/105 (36%), Positives = 50/105 (47%)
 Frame = +3

Query: 27  TRVAKRRRRYLQDIFTTLVDAQWRWTLLVXXXXXXXXXXXXXXXXXXXXXTHGDLTPIPL 206
           T VA++   YL D+FTT++D++WRW  L+                       G       
Sbjct: 110 TDVAQKHGMYLSDLFTTMIDSKWRWISLLFITAYTGSWMGFGCVWYLITYLRGGNY---- 165

Query: 207 TEQREPPVPCLNNVNSFTGCFLFSVETQHTIGYGSRTTNEECPEA 341
                    C++NV SF   FLFS+ETQ TIGYG R  + ECPEA
Sbjct: 166 ---------CVHNVESFVTAFLFSLETQTTIGYGGRQISGECPEA 201


>SB_58706| Best HMM Match : IRK (HMM E-Value=0)
          Length = 385

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 37/102 (36%), Positives = 45/102 (44%)
 Frame = +3

Query: 33  VAKRRRRYLQDIFTTLVDAQWRWTLLVXXXXXXXXXXXXXXXXXXXXXTHGDLTPIPLTE 212
           V  ++  YL D FTTL+DA+W W  L                             I    
Sbjct: 65  VENKKALYLADPFTTLLDAKWGWIFLAFASGFVTSWLFFGTLWWM----------IVKLR 114

Query: 213 QREPPVPCLNNVNSFTGCFLFSVETQHTIGYGSRTTNEECPE 338
            R     C++NV+S+   FLFSVETQ TIGYG R    ECPE
Sbjct: 115 TRFDTASCVDNVDSWISAFLFSVETQTTIGYGGRQVTPECPE 156


>SB_43914| Best HMM Match : IRK (HMM E-Value=5.3)
          Length = 141

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +3

Query: 27  TRVAKRRRRYL-QDIFTTLVDAQWRWTLLV 113
           T V K+ R YL +D+FTT++D +W W +L+
Sbjct: 81  TNVPKKLRLYLREDLFTTMIDMKWHWVILL 110


>SB_41714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 221 FSLFRKWNWGEVSVSE--NNEPPDKCEQEPREDEGKRKH*QRPAPLGVHEGREDVLKVS 51
           FS  R W  G +   E  + E  D      RED+ +  H  +P+P   H+G+ED+  VS
Sbjct: 59  FSAGRHWRLGRIPSFEGASYEEKDSASDSSREDDNR--HSPQPSPRPKHDGKEDIPLVS 115


>SB_57503| Best HMM Match : Brevenin (HMM E-Value=2)
          Length = 247

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 221 FSLFRKWNWGEVSVSE--NNEPPDKCEQEPREDEGKRKH*QRPAPLGVHEGREDVLKVS 51
           FS  R W  G +   E  + E  D      RED+ +  H  +P+P   H+G+ED+  VS
Sbjct: 170 FSAGRHWRLGRIPSFEGASYEEKDSASDSSREDDNR--HSPQPSPRPKHDGKEDIPLVS 226


>SB_39907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 22/80 (27%), Positives = 36/80 (45%)
 Frame = -3

Query: 278 RKEEAASKGVDVVEAGNGWFSLFRKWNWGEVSVSENNEPPDKCEQEPREDEGKRKH*QRP 99
           RK E   KG+   +  + WF   RK    + SV    +P D       +++ KRK  +  
Sbjct: 398 RKLEQQLKGILETQEKDLWFEKIRKCKVKDDSVYIIYDPTDARFSNNLKEDIKRKCPKVA 457

Query: 98  APLGVHEGREDVLKVSAPAL 39
               + + +ED LK++ P L
Sbjct: 458 MHKRLGQSKEDFLKLNGPDL 477


>SB_30823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -3

Query: 164 PPDKCEQEPREDE-GKRKH*QRPAPLG-VHEGREDVLKVSAPALSHPRAESCSPG 6
           PP      P ED     +    P P+G + EG    +      ++H R+ SCSPG
Sbjct: 13  PPSPSSPTPYEDVLPLSETLSPPCPVGNIREGISKTIMSEKGTVTHRRSNSCSPG 67


>SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15)
          Length = 889

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +2

Query: 53  IPSGHLH-DPRGRPVALDAASVCAFLHPLVALVRTYLVAHYFHSRRPHPNSTYGTERTTR 229
           +  GH   DPRG  +          LHP +   R+ ++ H+  +  P P+ T GT     
Sbjct: 405 VKRGHYRTDPRGVNLNRVYLDPDPTLHPSIFAARSVILYHHNSNGNPPPSCTCGTTNGNT 464

Query: 230 SLP 238
             P
Sbjct: 465 ESP 467


>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1735

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 23   RHEGG*AQAPIPSGHLHDPRGRP 91
            RHE G A+AP PS     P G+P
Sbjct: 1547 RHEDGAAEAPSPSLRERKPEGKP 1569


>SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = -3

Query: 299 DGVLSFNRKEEAASKGVDVVEAGNGWFSLFRKWNWGEVSVSENNEPPDKCEQEPREDEGK 120
           +G+L F +KEE   K ++  E G    S F KW   + ++ +N+   +  E E R  EGK
Sbjct: 131 EGIL-FEKKEEEELKKLEEYEKGGRDPSEFLKW---QETMRKNDMERELAEIEKRRLEGK 186


>SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)
          Length = 836

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +2

Query: 83  GRPVALDAASVCAFLHPLVALVRTYLVAHYFHSRRPHPNSTYGTERTTRSLPQQRQLLYW 262
           G P  L + +   F+  +V ++ ++   H  H R  HP S    E   + +  +R L  +
Sbjct: 236 GPPAILQSDNGGEFVGDVVKVLASHFNVHLVHGRPHHPQSQGQVENLNKQV--KRYLARF 293

Query: 263 LLPL 274
           L PL
Sbjct: 294 LQPL 297


>SB_1505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 187 SP*VKIMSHQISANKSHERMKESANTSSVQRHWAST 80
           SP +K   HQ + NK H+++ +   +   Q H  +T
Sbjct: 41  SPQLKTKQHQFTMNKLHQKVSKLQLSLDAQMHMQAT 76


>SB_59353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 224 WFSLFRKWNWGEVSVSENNEPPDKCEQEPREDEGKRK 114
           +F LF      E+ V+E N+   +C  +  +DEG+RK
Sbjct: 79  FFELFFNSEVIELIVTETNKYAVQCNPDEFDDEGRRK 115


>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
          Length = 1016

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = -3

Query: 77  GREDVLKVSAPALSHP----RAESCSPG 6
           GR   L  + P+LSHP     + SCSPG
Sbjct: 872 GRVKYLAATGPSLSHPFPLVTSNSCSPG 899


>SB_21415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 259 VKELTLLRQGTGGSLCSVSG 200
           +KELTL   G G  +C+VSG
Sbjct: 154 LKELTLQMYGEGNHVCNVSG 173


>SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 729

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -3

Query: 233 GNGWFSLFRKWNWGEVSVSENNEPPDKCEQEPREDEGKRKH*QRPAPLGVHEGREDVLKV 54
           G+G+ S  R+    EV   E     ++ E+E RE   +RK  +  AP     G+E+  + 
Sbjct: 123 GSGYISSRRR---REVEKEEEERQREEEEEEERERARRRKDQEDNAPSRRRRGKEEEEEA 179

Query: 53  SAP 45
           + P
Sbjct: 180 TPP 182


>SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 62  GHLHDPRGRPVALDAASVCAFLHPL-VALVRTYLVAHYFHSRRPHPNSTYGTERTTRSLP 238
           G +  P+G       A  C  +HPL  +   T+L++HY    +P P+S+  T      LP
Sbjct: 443 GMMEPPKGGGDLPSNALKCLDIHPLPSSSTITFLLSHYL-PPQPLPSSSAITFLLNHYLP 501

Query: 239 QQ 244
            Q
Sbjct: 502 PQ 503


>SB_55820| Best HMM Match : WD40 (HMM E-Value=0.18)
          Length = 197

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 209 RKWNWGEVSVSENNEPPDKCEQEPREDEGKRK 114
           R W+     + E+ +PP K   E R DE K +
Sbjct: 100 RVWDISCYYIKESEKPPPKENPEERSDEDKHR 131


>SB_53823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 209 RKWNWGEVSVSENNEPPDKCEQEPREDEGKRK 114
           +K  +GE++   N + P +C++E   D  ++K
Sbjct: 148 KKRAFGEINGGNNGQTPKRCKREALNDVPRKK 179


>SB_33207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 7   PGLQDSARGWLSAGADTFRTSSRPSWTPSGA 99
           P L+D    WL+ GAD +      +W   GA
Sbjct: 46  PWLEDGVFTWLTDGADPWLEDGVVTWMTDGA 76


>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 155 YLVAHYFHSRRPHPNSTYGTERTTR 229
           YL   +FH RRPH  ++   E  TR
Sbjct: 901 YLTPVHFHKRRPHDAASACVEDPTR 925


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,284,880
Number of Sequences: 59808
Number of extensions: 230955
Number of successful extensions: 722
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)